View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298-Insertion-9 (Length: 110)
Name: NF5298-Insertion-9
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 82; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 1396389 - 1396486
Alignment:
| Q |
8 |
cttgattctcttacaattcaatagtttgaaacctta-agcttacccaaattgactaaagcagatatcagtcaatgtttgtattcatgttatacgatga |
104 |
Q |
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| T |
1396389 |
cttgattctcttaaaattcaatagtttgaaaccttatagcttacccaaattgactaaagcagatatcagtcaatgtttgtattcatgttatatgatga |
1396486 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 1407397 - 1407497
Alignment:
| Q |
8 |
cttgattctcttacaattcaatagtttgaaaccttaagcttacccaaattgactaaagcagatatcagtcaa----tgtttgtattcatgttatacgatg |
103 |
Q |
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| T |
1407397 |
cttgattctcttaccattcaatagttcgaaaccttaagcttacccaaattgactaaagcagatatcggtcaatgtttgtttgtattcatgttatatgatg |
1407496 |
T |
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| Q |
104 |
a |
104 |
Q |
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| T |
1407497 |
a |
1407497 |
T |
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