View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298_high_1 (Length: 659)

Name: NF5298_high_1
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5298_high_1
NF5298_high_1
[»] chr3 (1 HSPs)
chr3 (13-640)||(24837753-24838378)


Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 13 - 640
Target Start/End: Complemental strand, 24838378 - 24837753
Alignment:
Q  13 aatatactagcactaataggggttgggtacggttatagagactggactctcgcaacatgcaaataaagatttgaaagaaatacttgtatatattagggat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24838378 aatatactagcactaataggggttgggtacggttatagagactggactctcgcaacatgcaaataaagatttgaaagaaatacttgtatatattagggat 24838279  T
Q  113 aaccatgattttccatgacacaattgagatttaaacgttgatttggctaggtggtggttaatgtgaggtgagagatcagaagagctaggtggagaagtag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24838278 aaccatgattttccatgacacaattgagatttaaacgttgatttggctaggtggtggttaatgtgaggtgagagatcagaagagctaggtggagaagtag 24838179  T
Q  213 tgacaatggttccgtgttgggcttgttatttaaacgtagcaggtgttctattagcatgacttaaatcatcagtaggaatgttttcaaggctagcgattga 312  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24838178 tgacagtggttccgtgttgggcttgttatttaaacgtagcaggtgttctattagcatgacgtaaatcatcagtaggaatgttttcaaggctagcgattga 24838079  T
Q  313 nnnnnnnnnnnnaaggaaaaggatagcgatttattgttggggcttcggaattttttcaatactcatgggttgttgttaaggctttatgacatgatgacat 412  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24838078 tttttttttt--aaggaaaaggatagcgatttattgttggggcttcggaattttttcaatactcatgggttgttgttaaggctttatgacatgatgacat 24837981  T
Q  413 gttgggttttacgacgttttgggtcgactgatctattgttgtgtcgttccacttaatgcgcatgtggtctagaaacaccaaatctcagattcacgcaact 512  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837980 gttgggttttacgacgttttgggtcgactgatctatttttgtgtcgttccacttaatgcgcatgtggtctagaaacaccaaatctcagattcacgcaact 24837881  T
Q  513 aaagcacaaaatcattaacttgtttcagtaacaaaagaccaaaagccaccgtaatcagtaagttaccttacctcgagtggatgcagaatgcgattggtgg 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24837880 aaagcacaaaatcattaacttgtttcagtaacaaaagaccaaaagccaccgtaatcagtaagttaccttacctcgagtcgatgcagaatgcgattggtgg 24837781  T
Q  613 tttgagaaaaccagttgcacgtctaaga 640  Q
    ||||||||||||||||||||||||||||    
T  24837780 tttgagaaaaccagttgcacgtctaaga 24837753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University