View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_high_14 (Length: 239)
Name: NF5298_high_14
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 174
Target Start/End: Original strand, 20116016 - 20116180
Alignment:
| Q |
10 |
cttgctacatctctggtgttcctggttccttttatggcaggattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatc |
109 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20116016 |
cttgctacttctctggtgttcccggttccttttatggcagaattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatc |
20116115 |
T |
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| Q |
110 |
taaggtttgttgatgactatctttttgtattctatatggagttactattctaggtaggggtggtt |
174 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
20116116 |
taaggtttgtttatgactatctttttgtattctatatggagttattattctacgtgggggtggtt |
20116180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 21943655 - 21943610
Alignment:
| Q |
10 |
cttgctacatctctggtgttcctggttccttttatggcaggatttt |
55 |
Q |
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| T |
21943655 |
cttgctacttctttggtgttcccggttccttttatggcagaatttt |
21943610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 32627778 - 32627687
Alignment:
| Q |
27 |
gttcctggttccttttatggcaggattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatctaaggtttg |
118 |
Q |
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| T |
32627778 |
gttcctggttcctttcatggtagaatttttcctcttcaaagtttgcattttgttcattcctcttatagccttcattggttatctaaggtttg |
32627687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 32704019 - 32703909
Alignment:
| Q |
10 |
cttgctacatctctggtgttcctggttccttttatggcaggattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatc |
109 |
Q |
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|||||||| ||| ||| ||||| |||||||| |||||||||||||| |||||| | ||||| ||||| ||||||||||| |||||| || | | |||| |
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| T |
32704019 |
cttgctacttctttggggttcccggttccttctatggcaggatttttcctaataaaagtttgcattttgttcattcctcttatagccttaagtttctatc |
32703920 |
T |
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| Q |
110 |
taaggtttgtt |
120 |
Q |
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||||||||||| |
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| T |
32703919 |
taaggtttgtt |
32703909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 32709722 - 32709623
Alignment:
| Q |
21 |
tctggtgttcctggttccttttatggcaggattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatctaaggtttgtt |
120 |
Q |
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| T |
32709722 |
tctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagccttatgtggctatctaaggtttgtt |
32709623 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 27736757 - 27736649
Alignment:
| Q |
12 |
tgctacatctctggtgttcctggttccttttatggcaggattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatcta |
111 |
Q |
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|||||| ||| ||| ||||||||||| ||||||||||| ||||| || || | ||||| ||||| ||||||||||| ||||| |||| ||| |||||| |
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| T |
27736757 |
tgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttcattcctcgtatagtcttcaatggctatcta |
27736658 |
T |
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| Q |
112 |
aggtttgtt |
120 |
Q |
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||||||||| |
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| T |
27736657 |
aggtttgtt |
27736649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 5811440 - 5811330
Alignment:
| Q |
10 |
cttgctacatctctggtgttcctggttccttttatggcaggattttccctaatgagagtttacatttagttcattcctcatatagcattcattggttatc |
109 |
Q |
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|||||||| |||||||||||||||| ||||||||| | ||||| || || || | ||||| ||||| || ||||| || || || |||| |||||||| |
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| T |
5811440 |
cttgctacttctctggtgttcctggatccttttatagtaggatctttccagataaaagtttgcattttgtgcattcttcttacagtcttcaatggttatc |
5811341 |
T |
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| Q |
110 |
taaggtttgtt |
120 |
Q |
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||||||||||| |
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| T |
5811340 |
taaggtttgtt |
5811330 |
T |
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