View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_high_8 (Length: 360)
Name: NF5298_high_8
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_high_8 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 6353481 - 6353138
Alignment:
| Q |
17 |
agttccaaccaactccaacatctagctagcatcctatgtttagattcttgtagttaaccttaaccactttcttctccttccacatcatcaatcataacaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6353481 |
agttccaaccaactccaacatctagctagcatcctatgtttagattcttgtagttaaccttaaccactttcttctccttccacattatcaatcataacaa |
6353382 |
T |
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| Q |
117 |
agatgttgaagaacttaacaaaagatctcaccacagcacttcattccaccattccagtcataaccaatattgcatcctcacaagaatctttgttgcaaga |
216 |
Q |
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| T |
6353381 |
agatgttgaagaacttaacaaaagatctcaccacagcagttcattccaccattccagtcataaccaatattgcatcctcacaagactctttgttgcaaga |
6353282 |
T |
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| Q |
217 |
tgtttctcaaatcatttcctcaaacacttccaaaatcatatcaaacactaatcctttagagactaacaacaccatttcgtcgaacatttcaaaaccactc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
6353281 |
tgtttctcaaatcatttcctcaaacacttccaaaatcatatcaaacactaatcctttagagactaacaacaccatttcctcaaacatttcaaaaccactc |
6353182 |
T |
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| Q |
317 |
accacaatcacaaacactaatccattagaaactatcaaatccat |
360 |
Q |
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| T |
6353181 |
accacaatcacaaacactaatccattagaaactatcaaatccat |
6353138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 6353171 - 6353072
Alignment:
| Q |
258 |
caaacactaatcctttagagactaacaacaccatttcgtcgaacatttcaaaaccactcaccacaatcacaaacactaatccattagaaactatcaaatc |
357 |
Q |
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| T |
6353171 |
caaacactaatccattagaaactatcaaatccatttcctctaacattttatcaccactaaccacaatcacaaacactactccattagaaaccatcaaatc |
6353072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 360
Target Start/End: Complemental strand, 6353032 - 6352931
Alignment:
| Q |
259 |
aaacactaatcctttagagactaacaacaccatttcgtcgaacatttcaaaaccactcaccacaatcacaaacactaatccattagaaactatcaaatcc |
358 |
Q |
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|||||||| ||||||||| || |||||||||||| || | |||||| |||||||| |||||||| ||| ||||||| |||||||||||||||||| |
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| T |
6353032 |
aaacactactcctttagaaacattcaacaccatttcctcacatatttcatcaccactcatcacaatcaaaaatgctaatccgttagaaactatcaaatcc |
6352933 |
T |
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| Q |
359 |
at |
360 |
Q |
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|| |
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| T |
6352932 |
at |
6352931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 331
Target Start/End: Complemental strand, 6352958 - 6352891
Alignment:
| Q |
264 |
ctaatcctttagagactaacaacaccatttcgtcgaacatttcaaaaccactcaccacaatcacaaac |
331 |
Q |
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||||||| ||||| |||| ||| ||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
6352958 |
ctaatccgttagaaactatcaaatccatttcctcaaacatttcatcaccactcaccacaatcacaaac |
6352891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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