View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298_low_1 (Length: 659)

Name: NF5298_low_1
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5298_low_1
NF5298_low_1
[»] chr3 (1 HSPs)
chr3 (13-640)||(24837753-24838378)


Alignment Details
Target: chr3 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 13 - 640
Target Start/End: Complemental strand, 24838378 - 24837753
Alignment:
Q  13 aatatactagcactaataggggttgggtacggttatagagactggactctcgcaacatgcaaataaagatttgaaagaaatacttgtatatattagggat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24838378 aatatactagcactaataggggttgggtacggttatagagactggactctcgcaacatgcaaataaagatttgaaagaaatacttgtatatattagggat 24838279  T
Q  113 aaccatgattttccatgacacaattgagatttaaacgttgatttggctaggtggtggttaatgtgaggtgagagatcagaagagctaggtggagaagtag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24838278 aaccatgattttccatgacacaattgagatttaaacgttgatttggctaggtggtggttaatgtgaggtgagagatcagaagagctaggtggagaagtag 24838179  T
Q  213 tgacaatggttccgtgttgggcttgttatttaaacgtagcaggtgttctattagcatgacttaaatcatcagtaggaatgttttcaaggctagcgattga 312  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24838178 tgacagtggttccgtgttgggcttgttatttaaacgtagcaggtgttctattagcatgacgtaaatcatcagtaggaatgttttcaaggctagcgattga 24838079  T
Q  313 nnnnnnnnnnnnaaggaaaaggatagcgatttattgttggggcttcggaattttttcaatactcatgggttgttgttaaggctttatgacatgatgacat 412  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24838078 tttttttttt--aaggaaaaggatagcgatttattgttggggcttcggaattttttcaatactcatgggttgttgttaaggctttatgacatgatgacat 24837981  T
Q  413 gttgggttttacgacgttttgggtcgactgatctattgttgtgtcgttccacttaatgcgcatgtggtctagaaacaccaaatctcagattcacgcaact 512  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24837980 gttgggttttacgacgttttgggtcgactgatctatttttgtgtcgttccacttaatgcgcatgtggtctagaaacaccaaatctcagattcacgcaact 24837881  T
Q  513 aaagcacaaaatcattaacttgtttcagtaacaaaagaccaaaagccaccgtaatcagtaagttaccttacctcgagtggatgcagaatgcgattggtgg 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24837880 aaagcacaaaatcattaacttgtttcagtaacaaaagaccaaaagccaccgtaatcagtaagttaccttacctcgagtcgatgcagaatgcgattggtgg 24837781  T
Q  613 tttgagaaaaccagttgcacgtctaaga 640  Q
    ||||||||||||||||||||||||||||    
T  24837780 tttgagaaaaccagttgcacgtctaaga 24837753  T

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