View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_low_10 (Length: 359)
Name: NF5298_low_10
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 35364790 - 35364463
Alignment:
| Q |
14 |
ttctctactttggattgaaatatcattctcttactctaaatttttctttttcaaaaatttaaatcaatggaatttttgtgtcgaattaaagggtttcgta |
113 |
Q |
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| T |
35364790 |
ttctctactttggattgaaatatcattctattactctaaatttttctttttcaaaaatttaaatcaacggaatttttgtgtggaattaaagggtttcata |
35364691 |
T |
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| Q |
114 |
attattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgca |
213 |
Q |
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| T |
35364690 |
attattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgca |
35364591 |
T |
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| Q |
214 |
cacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatcat |
313 |
Q |
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| T |
35364590 |
cacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatctt |
35364491 |
T |
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| Q |
314 |
gaatggctccaatgagtatatgtaccct |
341 |
Q |
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| T |
35364490 |
gaatggctccaatgagtatatgtaccct |
35364463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 146 - 341
Target Start/End: Complemental strand, 35376422 - 35376227
Alignment:
| Q |
146 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
245 |
Q |
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| T |
35376422 |
aacaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagac |
35376323 |
T |
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| Q |
246 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatcatgaatggctccaatgagtatatgtaccct |
341 |
Q |
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| T |
35376322 |
ctttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagtgcaacagatcttgactggctccaatgagtatatgtaccct |
35376227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 307
Target Start/End: Complemental strand, 35357867 - 35357706
Alignment:
| Q |
146 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
245 |
Q |
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|||||||||||||||| ||||| | |||||||||| | || | || ||| |||||| | | || |||||| || |||| ||||||| ||||||| || |
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| T |
35357867 |
aacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgcccaaatcgaaac |
35357768 |
T |
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| Q |
246 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaaca |
307 |
Q |
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| T |
35357767 |
ctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaaca |
35357706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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