View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_low_11 (Length: 341)
Name: NF5298_low_11
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 5051299 - 5051458
Alignment:
| Q |
15 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttatt |
114 |
Q |
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| T |
5051299 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttatt |
5051398 |
T |
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| Q |
115 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgt |
174 |
Q |
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| T |
5051399 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 5051458 - 5051553
Alignment:
| Q |
230 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatt |
324 |
Q |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatt |
5051553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 15 - 313
Target Start/End: Complemental strand, 51274120 - 51273825
Alignment:
| Q |
15 |
gaacctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttat |
113 |
Q |
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| T |
51274120 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaagccttctagtacacggtcacgtttat |
51274026 |
T |
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| Q |
114 |
ttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgc |
213 |
Q |
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| T |
51274025 |
tg-tgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctaccacgtgtggttttcttgc |
51273927 |
T |
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| Q |
214 |
agagaatcaagccatttgaaaatccaacaattctcgaatataag-gatg-atttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaa |
311 |
Q |
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| T |
51273926 |
agagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaa |
51273827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 134 - 324
Target Start/End: Complemental strand, 14908035 - 14907843
Alignment:
| Q |
134 |
tggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctaccatgtatggttttcttgcagagaatcaagccatttgaa |
233 |
Q |
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| T |
14908035 |
tggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaa |
14907936 |
T |
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| Q |
234 |
aatccaacaattctcgaatataag-gatgat-ttatcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatt |
324 |
Q |
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| T |
14907935 |
gatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatt |
14907843 |
T |
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