View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298_low_14 (Length: 243)

Name: NF5298_low_14

Description: NF5298

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5298_low_14

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 229; E-Value: 1e-126

Query Start/End: Original strand, 3 - 243

Target Start/End: Original strand, 39901659 - 39901899

Alignment:

Q	3	agatggacatcatcagttgattcggggaatgtgtaagcaaaataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttct	102	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39901659	agatgaacatcatgagttgattcggggaatgtgtaagcaaaataccatttatagccaccaacttcaaatacatctgaatagatctctctcgcatttttct	39901758	T

Q	103	gagaaaatctgtcaattgtccatttgaatcgttttggcaaagaatccacagtgttggcagtttcaggttgagcagcatctaatgtttatcagtttaaatt	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39901759	gagaaaatctgtcaattgtccatttgaatcgttttggcaaagaatccacagtgttggcagtttcaggttgagcagcatctaatgtttatcagtttaaatt	39901858	T

Q	203	aaaagagaaattaagtatccttccatgaattagctgaaaac	243	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39901859	aaaagagaaattaagtatcctgccatgaattagctgaaaac	39901899	T

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Target: chr5; HSP #2

Raw Score: 50; E-Value: 1e-19

Query Start/End: Original strand, 19 - 84

Target Start/End: Original strand, 39913636 - 39913701

Alignment:

Q	19	ttgattcggggaatgtgtaagcaaaataccatttatagccaccaacttcaaatacatctgaataga	84	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39913636	ttgattcagggaatgtgtaagcacaataccatttatagcccccagcttcaaatacatctgaataga	39913701	T

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Target: chr5; HSP #3

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 147 - 217

Target Start/End: Original strand, 37476959 - 37477029

Alignment:

Q	147	tccacagtgttggcagtttcaggttgagcagcatctaatgtttatcagtttaaattaaaagagaaattaag	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \|\| \| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	37476959	tccacagtgttggcagtttcaggttgagcaaccactaatgttcatgaatataaatgaaaagagcaattaag	37477029	T

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Target: chr5; HSP #4

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 43 - 84

Target Start/End: Original strand, 39868225 - 39868266

Alignment:

Q	43	aataccatttatagccaccaacttcaaatacatctgaataga	84	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39868225	aataccatttgtaacccccaacttcaaatacatctgaataga	39868266	T

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Target: chr5; HSP #5

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 44 - 80

Target Start/End: Complemental strand, 39732765 - 39732729

Alignment:

Q	44	ataccatttatagccaccaacttcaaatacatctgaa	80	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39732765	ataccatttatagcccccaacatcaaatacatctgaa	39732729	T

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