View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_low_2 (Length: 657)
Name: NF5298_low_2
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 1 - 647
Target Start/End: Original strand, 52034497 - 52035143
Alignment:
| Q |
1 |
tagttattctaaatggtgaatgctaatgatgctcgtaaaattgatgccacagattttaggtactcttatagctggaacagtggatgttggtgtggcatgg |
100 |
Q |
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| T |
52034497 |
tagttattttaaatggtgaatactaatgatgctcgtaaaattgatgccacagattttaggtactcttatagctggaacagtggatgttggtgtggcatgg |
52034596 |
T |
|
| Q |
101 |
tggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatgcccaaatgacaacgtgttctttgatgcctccg |
200 |
Q |
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| T |
52034597 |
tggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatgcccaaatgacaacgtgttctttgatgcctccg |
52034696 |
T |
|
| Q |
201 |
ttatatggggtttggtgggaccaagaagaatttttgggccactaggaaactacgaaaagctgaactgggccttcctaattggactactgagcccaataat |
300 |
Q |
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| T |
52034697 |
ttatatggggtttggtgggaccaagaagaatttttgggccactaggaaactacgaaaagctgaactgggccttcctaattggactactgagcccaataat |
52034796 |
T |
|
| Q |
301 |
catatgggccctaataaaagcctttcccagtcaaaaatggatatcatacattcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagc |
400 |
Q |
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| T |
52034797 |
catatgggccctaataaaagcctttcccagtcaaaaatggatatcatacattcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagc |
52034896 |
T |
|
| Q |
401 |
acagtgaatttcaattcatggattactgttgcagttatatttaactattttatccacaaatatcgtaagaagtggtgggagagatacaattatattcttg |
500 |
Q |
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| T |
52034897 |
acagtgaatttcaattcatggattactgttgcagttatatttaactattttatccacaaatatcgtaagaagtggtgggagagatacaattatattcttg |
52034996 |
T |
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| Q |
501 |
ctgctgctttagatgctggattggctttcatgactactcttctatactttacggttagtagtggtggtataagtttgaattggtggggacaagatgagca |
600 |
Q |
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| T |
52034997 |
ctgctgctttagatgctggattggctttcatgactactcttctatactttacggttagtagtggtggtataagtttgaattggtggggacaagatgagca |
52035096 |
T |
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| Q |
601 |
ttgtcctcttgctacatgtcctactgctaaaggcataattactgatg |
647 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52035097 |
ttgtcctcttgctacatgtcctactgctaaaggcatagttactgatg |
52035143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 36902890 - 36902971
Alignment:
| Q |
87 |
ttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatg |
168 |
Q |
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||||||| |||||||||||||||| ||| | || |||||||| || |||||| ||||||||||| |||||||||||||| |
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| T |
36902890 |
ttggtgtagcatggtggttgctagactcagtcaaaaacatatgtaataaagatcttcttcccaaaggcagtccatggacatg |
36902971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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