View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_low_3 (Length: 617)
Name: NF5298_low_3
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 10103186 - 10103450
Alignment:
| Q |
18 |
aatataagagtgataaatggttcgaccattgaggataatacgttttgtttcacggtacactaccgccgtgtgaaaaatagagaggtatgaattagattca |
117 |
Q |
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| T |
10103186 |
aatataagagtgataaatggttcgaccattgaggataatacgttttgtttcacggtacactaccgccgtgtgaaaaatagagaggtatgaattagattca |
10103285 |
T |
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| Q |
118 |
ttctagattaattaacacatcttatgtaaaagaaattatatacacttatatatgttgttgcttctctatattataggatgttgaagttctcaaagaaatt |
217 |
Q |
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| T |
10103286 |
ttctagattaattaacacatcttatgtaaaagaaattatatacacttatatatgttgttgcttctctatattataggatgttgaagttctcaaagaaatt |
10103385 |
T |
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| Q |
218 |
gttgagtctattatgaaagattaccctgattttctcatatcaggagggaaagaggtacaataatt |
282 |
Q |
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| T |
10103386 |
gttgagtctattatgaaagattaccctgattttctcatatcaggagggaaagaggtacaataatt |
10103450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 442 - 601
Target Start/End: Complemental strand, 40099293 - 40099129
Alignment:
| Q |
442 |
tacgttgttaacatggtcacgtaataaattttaaaatgtgcataaacttactatatatatggttgaccnnnnnnnttatgcggttgacc-nnnnnnnnnc |
540 |
Q |
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| T |
40099293 |
tacgttgttaacatggtcacgtaataaattttaaaatgtgcataaacttactatatatatggttgaccaaaaaaattatgcggttgaccaaaaaaaaaac |
40099194 |
T |
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| Q |
541 |
ttact----atggatatattgaatcgtttcttacatttgagccagatttaattgatagcatgtat |
601 |
Q |
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| T |
40099193 |
ttactatggatggatatattgaatcgtttcttacatttgagccagatttaattgatagcatgtat |
40099129 |
T |
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