View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5298_low_6 (Length: 407)
Name: NF5298_low_6
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5298_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 111 - 397
Target Start/End: Original strand, 52034241 - 52034527
Alignment:
| Q |
111 |
acatggtcttgtttttactgtctacgtacccttttctatttacagactccaggtttgaatgttattactgagtacattatgggtgtgattttacccggcc |
210 |
Q |
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| T |
52034241 |
acatggtcttgtttttactgtctacgtacccttttctatttacagactccaggtttgaatgttattactgagtacattatgggtgtgattttacccggcc |
52034340 |
T |
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| Q |
211 |
gaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagat |
310 |
Q |
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| T |
52034341 |
gaccaatagccaacgtttgcttcaagacctacgggtatatgagtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagat |
52034440 |
T |
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| Q |
311 |
cccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattctaaatggtgaatgctgatgatg |
397 |
Q |
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| T |
52034441 |
cccaccaaggtcaatgttcatagttcaggtatattgtctcaggctatttcctttcatagttattttaaatggtgaatactaatgatg |
52034527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 52034167 - 52034209
Alignment:
| Q |
19 |
ataactgccaccactaatcaggtacgtacgcttcattccctca |
61 |
Q |
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| T |
52034167 |
ataactgccaccactaatcaggtacgtacgcttcattccctca |
52034209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 2171172 - 2171112
Alignment:
| Q |
281 |
tgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggta |
341 |
Q |
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| T |
2171172 |
tgatttcaagcttggacactacatgaaaatccctccaagatcaatgttcttagttcaggta |
2171112 |
T |
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