View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5298_low_7 (Length: 402)

Name: NF5298_low_7
Description: NF5298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5298_low_7
NF5298_low_7
[»] chr8 (37 HSPs)
chr8 (87-349)||(4876013-4876275)
chr8 (85-293)||(4925962-4926170)
chr8 (139-299)||(21440284-21440444)
chr8 (198-349)||(4745027-4745178)
chr8 (117-298)||(10445958-10446139)
chr8 (119-392)||(4725477-4725763)
chr8 (139-392)||(4702729-4702995)
chr8 (125-299)||(4714051-4714225)
chr8 (119-392)||(4995506-4995792)
chr8 (142-310)||(4777261-4777429)
chr8 (139-313)||(4914213-4914387)
chr8 (139-392)||(4680599-4680865)
chr8 (139-392)||(4688233-4688499)
chr8 (142-299)||(4891073-4891230)
chr8 (139-298)||(4735969-4736128)
chr8 (198-392)||(4905006-4905213)
chr8 (15-72)||(4688277-4688334)
chr8 (15-69)||(21440346-21440400)
chr8 (15-72)||(4702773-4702830)
chr8 (15-72)||(4725541-4725598)
chr8 (15-69)||(4914289-4914343)
chr8 (24-72)||(4777331-4777379)
chr8 (15-72)||(4714109-4714166)
chr8 (347-392)||(4714286-4714331)
chr8 (347-392)||(4777166-4777211)
chr8 (347-392)||(4890964-4891009)
chr8 (347-392)||(4914121-4914166)
chr8 (347-392)||(4925850-4925895)
chr8 (347-392)||(10446204-10446249)
chr8 (28-72)||(4680656-4680700)
chr8 (17-69)||(4995572-4995624)
chr8 (352-392)||(21440175-21440215)
chr8 (30-69)||(4745027-4745066)
chr8 (16-69)||(10446025-10446078)
chr8 (29-69)||(4876125-4876165)
chr8 (30-72)||(4905171-4905213)
chr8 (347-392)||(4745189-4745234)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 87 - 349
Target Start/End: Complemental strand, 4876275 - 4876013
Alignment:
Q  87 gagtatatcacctgcagagaagattactcatcaacaacaactacattttgtaaggagctttccaagtggagtgagaaactgttacaaagtaaatgtacac 186  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||| ||    
T  4876275 gagtatagcacctgcagagaagattactcatcaacagcaactacattttgtaaggagctttccaagtggagtgagaaattgctacagaataaatgtaaac 4876176  T
Q  187 atgggtattcaatatttaatcagagctactttctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgt 286  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  4876175 atggatattcaatatttaatcagagctactttctattatggaaactatgataatctaaatgatccaccacaatttgatcttcattttggacctaatgtgt 4876076  T
Q  287 gggatacagtgaacttccccaatgtattactcaccacaaccagggagatcttttaaactccat 349  Q
    ||||||||||||| ||| | ||| ||| || |||||||| || ||||||| | || |||||||    
T  4876075 gggatacagtgaagttcacaaatttatcacgcaccacaatcaaggagatcatatacactccat 4876013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 85 - 293
Target Start/End: Complemental strand, 4926170 - 4925962
Alignment:
Q  85 aagagtatatcacctgcagagaagattactcatcaacaacaactacattttgtaaggagctttccaagtggagtgagaaactgttacaaagtaaatgtac 184  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||     
T  4926170 aagagtatatcacctgcagagatgattactcatcaacaacaactacattttgtacggagctttccaagtggagttagaaactgttacagaataaatgtaa 4926071  T
Q  185 acatgggtattcaatatttaatcagagctactttctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgt 284  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  4926070 acatgggtgttcaatatttaatcagagctactttcctttatggaaactatgataatataaatgaaccaccacaatttgatcttcattttggacctaatgt 4925971  T
Q  285 gtgggatac 293  Q
    |||||||||    
T  4925970 gtgggatac 4925962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 299
Target Start/End: Complemental strand, 21440444 - 21440284
Alignment:
Q  139 aggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttctattatggaaactatgat 237  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||| | |||| | |||||||||| |||||| |||||||||||||||||||||||    
T  21440444 aggagctttccaagtggagtgagaaactgttacaaaataaatgta-acaagtggtactaaatatttaataagagcttctttctattatggaaactatgat 21440346  T
Q  238 aatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaa 299  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21440345 aatctaaatgaaccaccacaatttgatcttcattttggagctaatgtgtgggatacagtgaa 21440284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 198 - 349
Target Start/End: Original strand, 4745027 - 4745178
Alignment:
Q  198 atatttaatcagagctactttctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtg 297  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||    
T  4745027 atatttaatcagagcttctttctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggtgctaatgtgtgggatacggtg 4745126  T
Q  298 aacttccccaatgtattactcaccacaaccagggagatcttttaaactccat 349  Q
    || ||||||||||||| | |||||||||| ||||||||| |||| |||||||    
T  4745127 aatttccccaatgtatcagtcaccacaacaagggagatcatttacactccat 4745178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 117 - 298
Target Start/End: Original strand, 10445958 - 10446139
Alignment:
Q  117 tcaacaacaactacattttgtaaggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctac 215  Q
    |||||| |||||| | | ||| ||||||||||| |||||||||||||| ||||||| | |||||||  ||| | |||||||||||||||||||||| | |    
T  10445958 tcaacagcaactagaatatgtgaggagctttcctagtggagtgagaaattgttacagaataaatgtt-acaagtggtattcaatatttaatcagagtttc 10446056  T
Q  216 tttctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtga 298  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10446057 tttctattatggaaactatgataatctaaatgaaacaccacagtttgatcttcattttggacctaatgtgtgggatacagtga 10446139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 119 - 392
Target Start/End: Original strand, 4725477 - 4725763
Alignment:
Q  119 aacaacaactacattttgtaaggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactt 217  Q
    ||||||||||| | | ||| || ||||||||||||||||||||||| ||||||||| ||||| || ||| | |||| | ||||||||||||||||| |||    
T  4725477 aacaacaactagaatatgtgagaagctttccaagtggagtgagaaattgttacaaaataaatata-acaagtggtactaaatatttaatcagagcttctt 4725575  T
Q  218 tctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatgtattact 317  Q
    |||||||||| ||||||||| |||||||  | ||||||||||||||||||||||||||| ||||||| |||||||| || |||||| ||||| |||  |     
T  4725576 tctattatggtaactatgatgatctaaacaagccaccacaatttgatcttcattttggagctaatgtttgggatactgtaaacttcaccaatctatcgcg 4725675  T
Q  318 caccacaaccagggagatcttttaaactc-------------catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    || ||||||||| |||||| |||| ||||             |||||||||||||||||||||||||  |||||||||||||||||||    
T  4725676 catcacaaccagtgagatcatttacactccatcactagattacatacaaccatgtcttgttaacacagacaaagggactccattcatt 4725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 4702729 - 4702995
Alignment:
Q  139 aggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatggg-tattcaatatttaatcagagctactttctattatggaaactatgat 237  Q
    ||||| ||||| | |||||||||||| ||||||| | |||||||| ||| | | || | ||||||||||||||||||||||||||||||| |||||||||    
T  4702729 aggagttttcctaatggagtgagaaattgttacagaataaatgta-acaagtgatactaaatatttaatcagagctactttctattatggtaactatgat 4702827  T
Q  238 aatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatgtattactcaccacaaccagggagatct 337  Q
     || ||||| | || ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||  ||||   | |||||||     
T  4702828 gatttaaatgatcccccagaatttgatcttcattttggacctaatgtctgggatacagtgaacttccccaatgcatcactcgtcacatttatggagatca 4702927  T
Q  338 tttaaactc-------------catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    |||| ||||             ||||||||||||||||||||||||| ||||||||||||||||||||    
T  4702928 tttacactccatcactagattacatacaaccatgtcttgttaacacaggcaaagggactccattcatt 4702995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 299
Target Start/End: Original strand, 4714051 - 4714225
Alignment:
Q  125 aactacattttgtaaggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttctatt 223  Q
    ||||||| | ||| |||||||||||||||||||||||||| ||||||| | |||||||| ||| | |||||| |||||||||||||| || |||||||||    
T  4714051 aactacaatatgtgaggagctttccaagtggagtgagaaattgttacagaataaatgta-acaagtggtattaaatatttaatcagatcttctttctatt 4714149  T
Q  224 atggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaa 299  Q
    | |||||||||||| || ||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  4714150 acggaaactatgatgatttaaatgagccaccagaatttgatcttcattttggacctaatgtttgggatacagtgaa 4714225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 119 - 392
Target Start/End: Original strand, 4995506 - 4995792
Alignment:
Q  119 aacaacaactacattttgtaaggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatgggtattcaatatttaatcagagctacttt 218  Q
    |||| |||||||| | ||| ||||||||||||| |||| ||||||||||||||| | ||||||||   |  |||| | ||||||||||||||||  ||||    
T  4995506 aacagcaactacaatatgtgaggagctttccaattggaatgagaaactgttacagaataaatgtagcaagtggtactaaatatttaatcagagcatcttt 4995605  T
Q  219 ctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatgtattactc 318  Q
    ||||||||| |||||||||||||||||  | |||||| |||||||||||||||||||||||||||| |||||||||||||| ||| ||| | ||| || |    
T  4995606 ctattatggtaactatgataatctaaacaagccaccagaatttgatcttcattttggacctaatgtttgggatacagtgaagttcgccagtctatcacac 4995705  T
Q  319 accacaaccagggagatcttttaaactc-------------catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    | ||||  ||| |||||| | || ||||             ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4995706 atcacagacagtgagatcatatacactccatcactagattacattcaaccatgtcttgttaacacaggcaaagggactccattcatt 4995792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 142 - 310
Target Start/End: Complemental strand, 4777429 - 4777261
Alignment:
Q  142 agctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttctattatggaaactatgataat 240  Q
    ||||||||||||||||||||||| ||||||| | |||||||| ||||  |||| | ||||||||||||||||| ||||||||||||| ||||||||| ||    
T  4777429 agctttccaagtggagtgagaaattgttacagaataaatgta-acatctggtactaaatatttaatcagagcttctttctattatggtaactatgatgat 4777331  T
Q  241 ctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatg 310  Q
     ||||| | || |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||    
T  4777330 ttaaatgaccctccacaatttgatcttcattttggagctaatgtttgggatactgtgaagttccccaatg 4777261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 139 - 313
Target Start/End: Complemental strand, 4914387 - 4914213
Alignment:
Q  139 aggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttctattatggaaactatgat 237  Q
    ||||| ||||| |||||||| ||||||||||||| | |||||||| ||| | |||| | ||||||||||||||||| |||| ||||||||||||||||||    
T  4914387 aggagttttcctagtggagttagaaactgttacagaataaatgta-acaagtggtactaaatatttaatcagagcttctttttattatggaaactatgat 4914289  T
Q  238 aatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatgtat 313  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||||| ||||| ||||| || ||| | |||||||    
T  4914288 aatctaaatcaaccaccagaatttgatctacattttggagctaatgtttgggaaacagtaaagttcactaatgtat 4914213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 4680599 - 4680865
Alignment:
Q  139 aggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatgggtattcaatatttaatcagagctactttctattatggaaactatgata 238  Q
    ||||||||||| |||||||||| ||| ||||||||| || |||||  ||  ||||   ||||||||||||||||| ||||||||||||||||||| |||     
T  4680599 aggagctttcccagtggagtgaaaaattgttacaaaatagatgtaaccaatggtaccaaatatttaatcagagcttctttctattatggaaactacgatg 4680698  T
Q  239 atctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatgtattactcaccacaaccagggagatctt 338  Q
    || ||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| || ||| | ||| ||| || ||  |||| || ||||||| |    
T  4680699 atttaaatgagccaccacaatttgatcttcattttggacctaatgtttgggatacagtaaagttcacaaatttatcacgcatgacaatcaaggagatcat 4680798  T
Q  339 ttaaactc-------------catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
     || ||||             ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  4680799 atacactccatcactagattacatacaaccatgtcttgttaacacaggcaaagggactccgttcatt 4680865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 139 - 392
Target Start/End: Original strand, 4688233 - 4688499
Alignment:
Q  139 aggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatggg-tattcaatatttaatcagagctactttctattatggaaactatgat 237  Q
    ||||| ||||| |||||||||||||| ||||||| | |||||||| ||| | | || | ||||||||||||||||  |||||||||||||||||||||||    
T  4688233 aggagttttcctagtggagtgagaaattgttacagaataaatgta-acaagtgatactaaatatttaatcagagcgtctttctattatggaaactatgat 4688331  T
Q  238 aatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaacttccccaatgtattactcaccacaaccagggagatct 337  Q
     || ||||  | ||||||||||||||||||||||||||  ||||||| ||||||||||| || ||| | ||| ||| ||||| | ||||||| ||||||     
T  4688332 gatttaaacgagccaccacaatttgatcttcattttggcgctaatgtttgggatacagtaaagttcacaaatttatcactcatcgcaaccagtgagatca 4688431  T
Q  338 tttaaactc-------------catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    |||| ||||             ||||||||||||||||||||||||| |||| |||||||||||||||    
T  4688432 tttacactccatcacaagattacatacaaccatgtcttgttaacacaggcaacgggactccattcatt 4688499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 142 - 299
Target Start/End: Complemental strand, 4891230 - 4891073
Alignment:
Q  142 agctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttctattatggaaactatgataat 240  Q
    ||||||||||||||||||||||||||||||||  ||| |||| ||| | |||| | ||||||| |||||| || ||||   |||||||||||||||||||    
T  4891230 agctttccaagtggagtgagaaactgttacaacataagtgta-acaagtggtactaaatattttatcagaacttcttttctttatggaaactatgataat 4891132  T
Q  241 ctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtgaa 299  Q
    |||||  | |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  4891131 ctaaacaagccaccacaatttgatcttcactttggagctaatgtgtgggatacagtgaa 4891073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 139 - 298
Target Start/End: Original strand, 4735969 - 4736128
Alignment:
Q  139 aggagctttccaagtggagtgagaaactgttacaaagtaaatgtacacatg-ggtattcaatatttaatcagagctactttctattatggaaactatgat 237  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| ||| | |||| | ||||||||||||||||||||||   |||||||| |||||||    
T  4735969 aggagctttccaagtggagtgagaaattgttacaaaataaatgta-acaagtggtactaaatatttaatcagagctacttttctttatggaagctatgat 4736067  T
Q  238 aatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtga 298  Q
      | || |  | ||||||||||||||||||||||||||||||||||||  || ||||||||    
T  4736068 ggtttagacaagccaccacaatttgatcttcattttggacctaatgtggtggctacagtga 4736128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 4905213 - 4905006
Alignment:
Q  198 atatttaatcagagctactttctattatggaaactatgataatctaaatcaaccaccacaatttgatcttcattttggacctaatgtgtgggatacagtg 297  Q
    ||||||||| |||||||||||||||||||| || |||||| || ||||| | || |||||||||||||||||||||||| | ||||| |||||||||||     
T  4905213 atatttaattagagctactttctattatggtaattatgatgatttaaatgaccctccacaatttgatcttcattttggagcaaatgtttgggatacagta 4905114  T
Q  298 aacttccccaatgtattactcaccacaaccagggagatcttttaaactc-------------catacaaccatgtcttgttaacacatgcaaagggactc 384  Q
    || ||| | | || || |||||| |||| || ||||||| |||| ||||             ||||||||||||||||||||||||| ||||||||||||    
T  4905113 aagttcacaattgcatcactcactacaatcaaggagatcatttacactccatcacaagattacatacaaccatgtcttgttaacacaggcaaagggactc 4905014  T
Q  385 cattcatt 392  Q
    ||||||||    
T  4905013 cattcatt 4905006  T

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Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4688277 - 4688334
Alignment:
Q  15 aacaagtgatactaaatatttaattagagcttctttctattatggaaactatgatgat 72  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  4688277 aacaagtgatactaaatatttaatcagagcgtctttctattatggaaactatgatgat 4688334  T

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Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 21440400 - 21440346
Alignment:
Q  15 aacaagtgatactaaatatttaattagagcttctttctattatggaaactatgat 69  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  21440400 aacaagtggtactaaatatttaataagagcttctttctattatggaaactatgat 21440346  T

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Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4702773 - 4702830
Alignment:
Q  15 aacaagtgatactaaatatttaattagagcttctttctattatggaaactatgatgat 72  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  4702773 aacaagtgatactaaatatttaatcagagctactttctattatggtaactatgatgat 4702830  T

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Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4725541 - 4725598
Alignment:
Q  15 aacaagtgatactaaatatttaattagagcttctttctattatggaaactatgatgat 72  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  4725541 aacaagtggtactaaatatttaatcagagcttctttctattatggtaactatgatgat 4725598  T

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Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 4914343 - 4914289
Alignment:
Q  15 aacaagtgatactaaatatttaattagagcttctttctattatggaaactatgat 69  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4914343 aacaagtggtactaaatatttaatcagagcttctttttattatggaaactatgat 4914289  T

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Target: chr8; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 4777379 - 4777331
Alignment:
Q  24 tactaaatatttaattagagcttctttctattatggaaactatgatgat 72  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  4777379 tactaaatatttaatcagagcttctttctattatggtaactatgatgat 4777331  T

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Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4714109 - 4714166
Alignment:
Q  15 aacaagtgatactaaatatttaattagagcttctttctattatggaaactatgatgat 72  Q
    |||||||| || |||||||||||| ||| ||||||||||||| |||||||||||||||    
T  4714109 aacaagtggtattaaatatttaatcagatcttctttctattacggaaactatgatgat 4714166  T

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Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 4714286 - 4714331
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  4714286 catacaaccatgtcttgttaacacaggaaaagggactccattcatt 4714331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 4777211 - 4777166
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||||||| || |||||||||||||||||    
T  4777211 catacaaccatgtcttgttaacacaggccaagggactccattcatt 4777166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 4891009 - 4890964
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  4891009 catacaaccatgtcttgttaacacaggaaaagggactccattcatt 4890964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 4914166 - 4914121
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  4914166 catacaaccatgtcttgttaacataggcaaagggactccattcatt 4914121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 4925895 - 4925850
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  4925895 catacaaccatgtcttgttaaaacaggcaaagggactccattcatt 4925850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 10446204 - 10446249
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10446204 catacaaccatgtcttgttaacacaggcaaagggattccattcatt 10446249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 4680656 - 4680700
Alignment:
Q  28 aaatatttaattagagcttctttctattatggaaactatgatgat 72  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||    
T  4680656 aaatatttaatcagagcttctttctattatggaaactacgatgat 4680700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 4995572 - 4995624
Alignment:
Q  17 caagtgatactaaatatttaattagagcttctttctattatggaaactatgat 69  Q
    |||||| ||||||||||||||| ||||| |||||||||||||| |||||||||    
T  4995572 caagtggtactaaatatttaatcagagcatctttctattatggtaactatgat 4995624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 21440215 - 21440175
Alignment:
Q  352 aaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  21440215 aaccatgtcttgttaacacaggcaaagggactccattcatt 21440175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 4745027 - 4745066
Alignment:
Q  30 atatttaattagagcttctttctattatggaaactatgat 69  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  4745027 atatttaatcagagcttctttctattatggaaactatgat 4745066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 10446025 - 10446078
Alignment:
Q  16 acaagtgatactaaatatttaattagagcttctttctattatggaaactatgat 69  Q
    ||||||| || | |||||||||| |||| |||||||||||||||||||||||||    
T  10446025 acaagtggtattcaatatttaatcagagtttctttctattatggaaactatgat 10446078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 4876165 - 4876125
Alignment:
Q  29 aatatttaattagagcttctttctattatggaaactatgat 69  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  4876165 aatatttaatcagagctactttctattatggaaactatgat 4876125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 4905213 - 4905171
Alignment:
Q  30 atatttaattagagcttctttctattatggaaactatgatgat 72  Q
    |||||||||||||||| ||||||||||||| || |||||||||    
T  4905213 atatttaattagagctactttctattatggtaattatgatgat 4905171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 4745189 - 4745234
Alignment:
Q  347 catacaaccatgtcttgttaacacatgcaaagggactccattcatt 392  Q
    ||||||||||||||||||||||||| |||   ||||||||||||||    
T  4745189 catacaaccatgtcttgttaacacaggcagcaggactccattcatt 4745234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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