View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299-Insertion-4 (Length: 478)
Name: NF5299-Insertion-4
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 7 - 478
Target Start/End: Complemental strand, 35094087 - 35093616
Alignment:
| Q |
7 |
aaaaagatctaaatgttaaaaaatgtattgtatattttcctcacttttttccttttacaactaataagacttatataggcaatgagagcaactaactagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094087 |
aaaaagatctaaatgttaaaaaatgtattgtatattttcctcacatttttccttttacaactaataagacttatataggcaatgagagcaactaactagt |
35093988 |
T |
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| Q |
107 |
gtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggttgaagatagtgaaaggtgtagcgaaaggg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093987 |
gtaactaacttttacatctaatacaggataccattctataggacaggaaagccttgactggccaagcaggttgaagatagtgaaaggtgtagcgaaaggg |
35093888 |
T |
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| Q |
207 |
attgaatatctatacaaggagttgccgaacttgattgcgcctcatggtcatcttaaatcctcaaatgttctattgaacgagtcattagagcctatactaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093887 |
attgaatatctatacaaggagttgccgaacttgattgcgcctcatggtcatcttaaatcctcaaatgttctattgaacgagtcattagagcctatactaa |
35093788 |
T |
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| Q |
307 |
ccgactacggattagtaccagtgataaaccaggatgttgctcatgaaataatggttatatacgcgtcacctgagtatttacagcacgggaggataacaaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35093787 |
ccgactacggattagtaccagtgataaaccaggatgttgctcatgaaataatggttatatacgcgtcacctgagtatttacagcacgggaggataacaaa |
35093688 |
T |
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| Q |
407 |
gaagactgatgtgtggagtctcggtatactcattttggaaattctaaccggaaaacttcctgctaatttcct |
478 |
Q |
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| T |
35093687 |
gaagactgatgtgtggagtctcggtatactcattttggaaattctaaccggaaaacttcctgctaatttcct |
35093616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 34239772 - 34239714
Alignment:
| Q |
69 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
127 |
Q |
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|||||||||||||||| | || ||| ||||||||| ||||||||||||||||||||||| |
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| T |
34239772 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
34239714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
69 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatcta |
126 |
Q |
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|||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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