View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_high_13 (Length: 240)
Name: NF5299_high_13
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_high_13 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 23966372 - 23966593
Alignment:
| Q |
19 |
acattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaaatttgccgaaagtctcctcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
23966372 |
acattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctgacctgtcagctcttggaacaactggtaaaatttgcctaaagtctcctcca |
23966471 |
T |
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| Q |
119 |
aacacaatgatcttgccaccaaatattttgtcaccgtccgcagtgtcagacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgag |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
23966472 |
aacacaatgaccttgccaccaaatattttgtcaccgtccacagtgtcagacataatgtcttttagagttctatccgaagcttcaaaacagaacttatgag |
23966571 |
T |
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| Q |
219 |
ccattggtgcctcatcccatat |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
23966572 |
ccattggtgcctcatcccatat |
23966593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 25807934 - 25807980
Alignment:
| Q |
194 |
aaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
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||||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
25807934 |
aaagcctcaaaacaaaatttatgcgccattggtgcctcatcccatat |
25807980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 129188 - 128967
Alignment:
| Q |
19 |
acattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaaatttgccgaaagtctcctcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
129188 |
acattcatcccaaatgtatgaagaatttattgatgaatataaaatgtctgacctgtcagctcttggcacaactggtaaaatttgcctaaagtctcctcca |
129089 |
T |
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| Q |
119 |
aacacaatgatcttgccaccaaatattttgtcaccgtccgcagtgtcagacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgag |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
129088 |
aacacaatgaccttgccaccaaatattttgtcaccgtccgcagtgtcggacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgag |
128989 |
T |
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| Q |
219 |
ccattggtgcctcatcccatat |
240 |
Q |
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|||||||||| ||||||||||| |
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| T |
128988 |
ccattggtgcttcatcccatat |
128967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 33546492 - 33546271
Alignment:
| Q |
19 |
acattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaaatttgccgaaagtctcctcca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
33546492 |
acattcatcccaaatgtatgaagaatttattgatgaatttataatgtctgacctgtcagctcttggcacaactggtaaaatttgcctaaagtctcctcca |
33546393 |
T |
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| Q |
119 |
aacacaatgatcttgccaccaaatattttgtcaccgtccgcagtgtcagacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgag |
218 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33546392 |
aacacaatgaccttgccaccaaatattttgtcaccgtccgcagtgtcggacataatgtcttttagagttctatccaaagcttcaaaacagaacttatgag |
33546293 |
T |
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| Q |
219 |
ccattggtgcctcatcccatat |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
33546292 |
ccattggtgcctcatcccatat |
33546271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 26226926 - 26226705
Alignment:
| Q |
19 |
acattcatcccaaatgtatgaagaatttattgatgaatgtacaatgtctggcctgtcagctcttggtgcaactggtaaaatttgccgaaagtctcctcca |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
26226926 |
acattcatcccaaatgtatgaagaatttattgatgaatttataatgtctgacctgtcagctcttggcacaactggtaaaatttgcctaaagtctcctcca |
26226827 |
T |
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| Q |
119 |
aacacaatgatcttgccaccaaatattttgtcaccgtccgcagtgtcagacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgag |
218 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26226826 |
aacacaatgaccttgccaccaaatattttgtcaccgtccgtagtgtcggacataatgtcttttagagttctatccaaagcttcaaaacataacttatgag |
26226727 |
T |
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| Q |
219 |
ccattggtgcctcatcccatat |
240 |
Q |
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|||||||||||||||||||||| |
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| T |
26226726 |
ccattggtgcctcatcccatat |
26226705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 14972461 - 14972528
Alignment:
| Q |
173 |
atgtcttttagagttctatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
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|||||||| || |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
14972461 |
atgtctttgagtgttctatccaaagcttcaaagcaaaacctatgagccattggtgcctcatcccatat |
14972528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 4258986 - 4259059
Alignment:
| Q |
167 |
gacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
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|||||||||||| | ||||||||||| | ||||||||| |||||| |||||||||| || ||||| |||||||| |
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| T |
4258986 |
gacataatgtctctgagagttctatctagagcttcaaagcaaaacctatgagccatgggagcctcgtcccatat |
4259059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 20535519 - 20535592
Alignment:
| Q |
167 |
gacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
| |
|
|||||||||||| | ||||||||||| | ||||||||| |||||| |||||||||| || ||||| |||||||| |
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| T |
20535519 |
gacataatgtctctgagagttctatctagagcttcaaagcaaaacctatgagccatgggagcctcgtcccatat |
20535592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 22321563 - 22321512
Alignment:
| Q |
189 |
tatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
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|||| ||||| ||||||||||| || || ||||||||||||||||||||||| |
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| T |
22321563 |
tatctaaagcctcaaaacaaaatttgtgtgccattggtgcctcatcccatat |
22321512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 21901956 - 21902029
Alignment:
| Q |
167 |
gacataatgtcttttagagttctatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
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|
|||||||||||| | ||||||||||| | ||||||||| |||||| |||||||||| || ||||| |||||||| |
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| T |
21901956 |
gacataatgtctctgagagttctatctagagcttcaaagcaaaacctatgagccatgggagcctcgtcccatat |
21902029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 53692208 - 53692156
Alignment:
| Q |
173 |
atgtcttttagagttctatccaaagcttcaaaacaaaacttatgagccattgg |
225 |
Q |
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|||||||| || ||||||||||| ||||||||| ||||||| ||||||||||| |
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| T |
53692208 |
atgtctttgagtgttctatccaatgcttcaaaataaaacttgtgagccattgg |
53692156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 1371620 - 1371671
Alignment:
| Q |
189 |
tatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
| |
|
|||| ||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
1371620 |
tatctaaagcctcaaaacaaaatttattcgccattggtgcctcatcccatat |
1371671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 19290914 - 19290982
Alignment:
| Q |
172 |
aatgtcttttagagttctatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
| |
|
||||||||| || |||||||| | |||||||||||| || ||||||||||| ||||| || |||||||| |
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| T |
19290914 |
aatgtctttgagtgttctatctagagcttcaaaacagaatttatgagccatgggtgcttcgtcccatat |
19290982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 8577 - 8526
Alignment:
| Q |
189 |
tatccaaagcttcaaaacaaaacttatgagccattggtgcctcatcccatat |
240 |
Q |
| |
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|||||||||| ||||||||||| | || ||||||||||||||||||||||| |
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| T |
8577 |
tatccaaagcctcaaaacaaaatatgtgtgccattggtgcctcatcccatat |
8526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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