View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_high_15 (Length: 228)
Name: NF5299_high_15
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 22047275 - 22047056
Alignment:
| Q |
7 |
acatcctcatattaaaatcaacttacatttgcatgttgcagccatatggagagttcgacactaaatttgttaaagaacattattatgagcttggtctaag |
106 |
Q |
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| T |
22047275 |
acatcctcatattaaaaccaacttacatttgcatgttgcagccatatggagagttcgaccctaaatttgttaaagaacattattatgagcttggtctaag |
22047176 |
T |
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| Q |
107 |
attaactatcatcgataggagaggcaacacaaaggatgtcgatttcaacttaagttttcattttcctctaatcactaaaggatggattgaattgagacaa |
206 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22047175 |
attaactatcatcgataggagaggca--acataggatgtggatttcaacttaagttttcattttcctctaatcactaaaggatggactgaattgagacaa |
22047078 |
T |
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| Q |
207 |
ttatttgaaattaatggtaaca |
228 |
Q |
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||||||| |||||||||||||| |
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| T |
22047077 |
ttatttggaattaatggtaaca |
22047056 |
T |
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