View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_high_17 (Length: 219)
Name: NF5299_high_17
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 49202266 - 49202338
Alignment:
| Q |
129 |
agtatgattcaagtaacacaagttactggcttatgtttattttttggatgtactagttacgatgcaagctcaa |
201 |
Q |
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| T |
49202266 |
agtatgattcaagtaacacaagttattggcttatgtttattttttggatgtactagttacgatgcaagctcaa |
49202338 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 49202150 - 49202231
Alignment:
| Q |
11 |
catcatcaagccaaaggataaatgtgatttcactggtannnnnnncatttaccttcttgtttaaggctcaattcatttcata |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49202150 |
catcatcaagccaaaggataaatgtgatttcactggtatttttttcatttaccttcttgtttaaggctcaattcatttcata |
49202231 |
T |
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