View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5299_high_2 (Length: 618)
Name: NF5299_high_2
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 500 - 603
Target Start/End: Original strand, 56110660 - 56110763
Alignment:
| Q |
500 |
gtacaaagatacaactatcaattacacaaactttacatgtctatctctcaataaagctcgatggaaacaaaagaccaaaatcaatcaatacctatgaagc |
599 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
56110660 |
gtacaaagatacaaccatcaattacacaaactttacatgtctatctctcaataaagctcgatgaaaacaaaaaaccaaaattaatcaatacctatgaagc |
56110759 |
T |
|
| Q |
600 |
acag |
603 |
Q |
| |
|
|||| |
|
|
| T |
56110760 |
acag |
56110763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 500 - 603
Target Start/End: Original strand, 26016427 - 26016530
Alignment:
| Q |
500 |
gtacaaagatacaactatcaattacacaaactttacatgtctatctctcaataaagctcgatggaaacaaaagaccaaaatcaatcaatacctatgaagc |
599 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26016427 |
gtacaaagatacaaccatcaattacacatactttacatgtctatctctaaataaagctcgatgaaaacaaaaaaccaaaattaatcaatacctatgaagc |
26016526 |
T |
|
| Q |
600 |
acag |
603 |
Q |
| |
|
|||| |
|
|
| T |
26016527 |
acag |
26016530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 465
Target Start/End: Complemental strand, 3583012 - 3582972
Alignment:
| Q |
425 |
aaaaggataaaattggaattttcaaggatttgtaggggtga |
465 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
3583012 |
aaaaggacaaaattggaattttcaatgatttgtatgggtga |
3582972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University