View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5299_high_4 (Length: 503)
Name: NF5299_high_4
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 221614 - 221211
Alignment:
| Q |
18 |
gcatgacgccaattcgtcatcagcaatgaaaataacgaggggattttcaatattacaaagggacaataatctgtcacatggagattattgtgtgtttgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
221614 |
gcatgacgccaattcgtcatcagcaatgaaaataacgaggggattttcaatatttcaaagggacaataatctgtcacatggagattattgtgtgtttgag |
221515 |
T |
|
| Q |
118 |
ctgatcaagaataatccgttggtgctaaaagtcacgatgtttcgtgcggctgactatggcgattaacaacttatgtatcctctctactttgatgttttgg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
221514 |
ctgatcaagaataatccgttggtgctaaaagtcacaatgtttcgtgcggctgactatggcgattaacaacttatgtatcctctctactttgatgttttgg |
221415 |
T |
|
| Q |
218 |
tatttgataatttcaatgcattgcaccaacaagtaatgtaataggcacttatgtattctgttttatattgcttatataggatgtctttgctttttcgacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
221414 |
tatttgataatttcaatgcattgcaccaacaagtaatgtaataggcactt-tgtattctgttttatattgcttatataggatgtctttgctttttcgacc |
221316 |
T |
|
| Q |
318 |
ttgaagcagtgtagaattagaacttagttactgatgtagtcagtgacatgtaaatgaaatggctatgatgacagtcct-aaaatgaacatgccatgttgc |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
221315 |
ttgaagcagtgtagaattagaacttaggtactaatgtagtcagtgacatgtaaatgaaatggctatgatgacaggcctaaaaatcaacatgccatgttgc |
221216 |
T |
|
| Q |
417 |
cttcc |
421 |
Q |
| |
|
||||| |
|
|
| T |
221215 |
cttcc |
221211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 216646 - 216473
Alignment:
| Q |
38 |
cagcaatgaaaataacgaggggattttcaatattacaaagggacaataatctgtcacatggagattattgtgtgtttgagctgatcaagaataatccgtt |
137 |
Q |
| |
|
||||||||| |||| | ||||||||| | ||||| | ||||| ||| |||||||| |||||||||||||||||||| ||||||||||| || | ||| |
|
|
| T |
216646 |
cagcaatgataatatcaaggggatttcctatatttctaaggggcaacaatctgtctcatggagattattgtgtgttcgagctgatcaataagacgccgga |
216547 |
T |
|
| Q |
138 |
ggtgctaaaagtcacgatgtttcgtgcggctgactatggcgattaacaacttatgtatcctctctactttgatg |
211 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||| || |||| ||||||| |||||||| ||||||||| |
|
|
| T |
216546 |
tgtgctaaaagtcacaatgtttcgtgtgattgactattacgtttaataacttatcgatcctctccactttgatg |
216473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 196696 - 196601
Alignment:
| Q |
79 |
gacaataatctgtcacatggagattattgtgtgtttgagctgatcaagaataatccgttggtgctaaaagtcacgatgtttcgtgcggctgactat |
174 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| |||||| |||||||| || ||| | |||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
196696 |
gacaacaatctgtcacatcgagattattgtgtgtatgagctcatcaagaagaagccggttgtgctagaagtcacaatgtttcgtgcggttgactat |
196601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 221209 - 221161
Alignment:
| Q |
445 |
tattagtttttagggttcgaaccctgaaccttctagtagcacgcctttg |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
221209 |
tattagtttttagggttcgaaccctgaaccttctagtagtacgcctttg |
221161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 206460 - 206405
Alignment:
| Q |
139 |
gtgctaaaagtcacgatgtttcgtgcggctgactatggcgattaacaacttatgta |
194 |
Q |
| |
|
|||||| ||||||||||||||| || || ||||||| ||||||||||||| ||||| |
|
|
| T |
206460 |
gtgctagaagtcacgatgtttcatgtggttgactattgcgattaacaactcatgta |
206405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 206351 - 206319
Alignment:
| Q |
211 |
gttttggtatttgataatttcaatgcattgcac |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
206351 |
gttttggtatttgataatttccatgcattgcac |
206319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 209778 - 209746
Alignment:
| Q |
211 |
gttttggtatttgataatttcaatgcattgcac |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
209778 |
gttttggtatttgataatttccatgcattgcac |
209746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 187
Target Start/End: Complemental strand, 29837905 - 29837752
Alignment:
| Q |
34 |
tcatcagcaatgaaaataacgaggggattttcaatattacaaagggacaataatctgtcacatggagattattgtgtgtttgagctgatcaagaataatc |
133 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| |||| |||||| || ||||| ||||||||||||||||||||||||||||||||| || | |
|
|
| T |
29837905 |
tcatcagcaatacaaataacgaggggattttctatatttcaaaaggacaacaacctgtcgtatggagattattgtgtgtttgagctgatcaagacaaaac |
29837806 |
T |
|
| Q |
134 |
cgttggtgctaaaagtcacgatgtttcgtgcggctgactatggcgattaacaac |
187 |
Q |
| |
|
|| | |||||||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
29837805 |
cggttgtgctaaaagtcacaatgtttcgtgctattgactattgcgattaacaac |
29837752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 6901880 - 6901929
Alignment:
| Q |
139 |
gtgctaaaagtcacgatgtttcgtgcggctgactatggcgattaacaact |
188 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
6901880 |
gtgctagaagtcacgatgtttcgtgtggttgactattgcgattaacaact |
6901929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University