View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_low_11 (Length: 249)
Name: NF5299_low_11
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 13003326 - 13003107
Alignment:
| Q |
13 |
aaaataaataactgttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattggaatagatatttat |
112 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
13003326 |
aaaataaataacttttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaaatgtaatagatatttat |
13003227 |
T |
|
| Q |
113 |
ttaattatgtttgttaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaa |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13003226 |
ttaattatgtttgtcaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaa |
13003127 |
T |
|
| Q |
213 |
gattagtcagaagaaagaag |
232 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
13003126 |
gattagtcagaagaaagaag |
13003107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 31252260 - 31252479
Alignment:
| Q |
13 |
aaaataaataactgttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattggaatagatatttat |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
31252260 |
aaaataaataacttttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatggatatttat |
31252359 |
T |
|
| Q |
113 |
ttaattatgtttgttaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaa |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252360 |
ttaattatgtttgtcaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaa |
31252459 |
T |
|
| Q |
213 |
gattagtcagaagaaagaag |
232 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
31252460 |
gattagtcagaagaaagaag |
31252479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 31094109 - 31093907
Alignment:
| Q |
30 |
acttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattggaatagatatttatttaattatgtttgttag |
129 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||| ||||||||| ||||||||||| | |||||| |||||||||||||||| | | || |
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| T |
31094109 |
acttcaattgtagatatattgtgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgtatatcag |
31094010 |
T |
|
| Q |
130 |
gctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcagaagaaag |
229 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31094009 |
gctttaattgaagaaggagcggttgagctagtggtttcaggaaactttccaatagggtgtaatactgacatattgtcaaaaaagattagtcagaagaaag |
31093910 |
T |
|
| Q |
230 |
aag |
232 |
Q |
| |
|
||| |
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|
| T |
31093909 |
aag |
31093907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 16162964 - 16163167
Alignment:
| Q |
25 |
tgttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattggaatagatatttatttaattatgttt |
124 |
Q |
| |
|
|||| ||||||| | ||||||||| |||||||||||||| | |||||||| ||||||| | | | |||| || ||||| |||||||||||| | || |
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|
| T |
16162964 |
tgtttacttcaactctagaataatcatgtttaagttatagattatattgaa-aaataataatat-gaaaaaatgtaatagtgatttatttaatttttctt |
16163061 |
T |
|
| Q |
125 |
gttaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaatactgacatattgtcaaaaaagattagtcagaa |
224 |
Q |
| |
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| |||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||| || || |
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| T |
16163062 |
atcaggcattaattgaagaaggagcggttgagctagtggttccaggtaactttccaatgggatgtaatgttgacatattgacaaaaaagattagccaaaa |
16163161 |
T |
|
| Q |
225 |
gaaaga |
230 |
Q |
| |
|
|||||| |
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|
| T |
16163162 |
gaaaga |
16163167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 27206363 - 27206506
Alignment:
| Q |
89 |
tggaaaattggaatagatatttatttaattatgtttgttaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtg |
188 |
Q |
| |
|
||||||| || ||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||| | |||||| ||||||||| ||||| || || |
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| T |
27206363 |
tggaaaaatgtaatagtcatttatttaattttgtttcacaggctttaattgaagaaggagcggtagagttggtggttttagggaacttcccaataggatg |
27206462 |
T |
|
| Q |
189 |
taatactgacatattgtcaaaaaagattagtcagaagaaagaag |
232 |
Q |
| |
|
|| | || || |||||||||| |||||||||||||||||||||| |
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|
| T |
27206463 |
tactgctcacttattgtcaaataagattagtcagaagaaagaag |
27206506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 27228950 - 27229126
Alignment:
| Q |
14 |
aaataaataactgttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattggaatagatatttatt |
113 |
Q |
| |
|
|||||| ||| |||| ||||||||||| ||||||| | ||| |||||||| | || |||||||||||| ||||||| || | ||||| ||||| | |
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|
| T |
27228950 |
aaataattaaatgttttcttcaattgtataataattctttttgagttatagat--tagtgaataaataataatcttggataaatataatagtcatttaat |
27229047 |
T |
|
| Q |
114 |
taattatgtttgttaggctttaattgaagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat |
192 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||| | || |||||||||||||| ||||||||||| ||||||||| |
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|
| T |
27229048 |
taattatgttttctaggcattgattgaagaaggagcaatagaactagtggttccaggaaactttccaatagggtgtaat |
27229126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 25658493 - 25658545
Alignment:
| Q |
140 |
aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat |
192 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||| ||||||||| |
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|
| T |
25658493 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat |
25658545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 25664898 - 25664950
Alignment:
| Q |
140 |
aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat |
192 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||| ||||||||| |
|
|
| T |
25664898 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat |
25664950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 25671303 - 25671355
Alignment:
| Q |
140 |
aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat |
192 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||| ||||||||| |
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|
| T |
25671303 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat |
25671355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 25677708 - 25677760
Alignment:
| Q |
140 |
aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat |
192 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||| ||||||||| |
|
|
| T |
25677708 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat |
25677760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 25684384 - 25684436
Alignment:
| Q |
140 |
aagaaggagcggtggagctagtggttccagggaactttccaatggggtgtaat |
192 |
Q |
| |
|
|||||||||| |||||||||||| |||| || ||||||||||| ||||||||| |
|
|
| T |
25684384 |
aagaaggagccgtggagctagtgattcctggaaactttccaattgggtgtaat |
25684436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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