View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_low_12 (Length: 245)
Name: NF5299_low_12
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 45894593 - 45894815
Alignment:
| Q |
4 |
gtgaaatttcatacacacttcagcccgtactattcatcattttccaaatatatattatccatttaatggtttaaatctgcagaattttatgcatatacca |
103 |
Q |
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| T |
45894593 |
gtgaaatttcgtacacacttcagcccgtactatttatcatttttcaaatatatattatccatttaatggtttaaatctgcagaatgttatgcatttacta |
45894692 |
T |
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| Q |
104 |
ggaaacttccatttaaaaagtgctatcgttagcaggttcaaccactccacnnnnnnngtaagatcgttccttaattaaattaaactaaaccattctgtcc |
203 |
Q |
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| T |
45894693 |
ggaaacttccatttaaaaagtgctatcgtttgcaggttcaaccactccacaaaaaaagtaagatcgttccttaattaaattaaactaaaccattctgtcc |
45894792 |
T |
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| Q |
204 |
attatctattatatatataagtc |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
45894793 |
attatctattatatatataagtc |
45894815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 24435227 - 24435184
Alignment:
| Q |
5 |
tgaaatttcatacacacttcagcccgtactattcatcattttcc |
48 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24435227 |
tgaaatttcatacacacttcagcccgtactatttatcattttcc |
24435184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7114917 - 7114876
Alignment:
| Q |
7 |
aaatttcatacacacttcagcccgtactattcatcattttcc |
48 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
7114917 |
aaatttcgtacacacttcagcccgtactatttatcattttcc |
7114876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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