View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5299_low_13 (Length: 241)
Name: NF5299_low_13
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_low_13 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 42926251 - 42926017
Alignment:
| Q |
7 |
gtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926251 |
gtgagtttgctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgttt |
42926152 |
T |
|
| Q |
107 |
tttcgctcacacgacagagcaacttagggctccgactcaacagagtccccgcagtgtgccctccgttgattcgtacgacggttctcctctcaggcttgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42926151 |
tttcgctcacacgacagagcaacttagggctccgactcaacagagtccccgcagtgtgccctccgttgattcgtacgacggttctcctctcaggcttgct |
42926052 |
T |
|
| Q |
207 |
tttgagtcttcctgtgtgaaaactcttcagttcat |
241 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42926051 |
tttgagtcttcctgtgtgaaaactcttcaattcat |
42926017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 34340353 - 34340454
Alignment:
| Q |
18 |
catggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaaccagttgtcgccggccagtttgttttttcgctcaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||||| |
|
|
| T |
34340353 |
catggtgttttcgagtgttggcttcatcctgcacgttaccgtactcagccgtgtaaagacggaaccagctgtcgccggcgtgtttgcttcttcgctcaca |
34340452 |
T |
|
| Q |
118 |
cg |
119 |
Q |
| |
|
|| |
|
|
| T |
34340453 |
cg |
34340454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 47893965 - 47894033
Alignment:
| Q |
15 |
gctcatggtgttttcgagtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaacc |
83 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| |||||| | ||||||| ||||| ||||||||| |
|
|
| T |
47893965 |
gctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacggaacc |
47894033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University