View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_low_15 (Length: 239)
Name: NF5299_low_15
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35999527 - 35999748
Alignment:
| Q |
1 |
tcttaccatggaaaggctccgctttagattttgtggttggagtttgcttaactcagagtgtgagagactcttcgtcaaggtaaagttgaaaaataattaa |
100 |
Q |
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| T |
35999527 |
tcttaccatggaaaggctccgctttagattttgtggttggagtttgcttaactcagagtgtgagagactcttcgtcaaggtaaagttgtaaaataattaa |
35999626 |
T |
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| Q |
101 |
ttaatttacccaaattttcattggctttgaatattaatactcactcttgtttctatagcaatgcatttatgtcacttgctgcgaatttgcctgttaaacc |
200 |
Q |
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| T |
35999627 |
ttaatttacccaaattttcattggctttgaatattaatactcactcttgtttctatagcaaagcatttatgtcacttgctgcgaatttccctattaaacc |
35999726 |
T |
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| Q |
201 |
agctcgcaggaaacaaagcaac |
222 |
Q |
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| T |
35999727 |
agctcgcagggaacaaagcaac |
35999748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 184
Target Start/End: Original strand, 1688443 - 1688557
Alignment:
| Q |
74 |
gtcaaggtaaagttgaa-aaataattaattaatttacccaaattttcattggctttgaatattaata---ctcactcttgtttctatagcaatgcattta |
169 |
Q |
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| T |
1688443 |
gtcaaggtaaagttaaataaataatcaattaatttattcaatttatctttggtgttgaataataataatactcattcttgtttcaaaagctctgcattta |
1688542 |
T |
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| Q |
170 |
tgtcacttgctgcga |
184 |
Q |
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| T |
1688543 |
tgtcacttgctgcga |
1688557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 41918893 - 41919085
Alignment:
| Q |
1 |
tcttaccatggaaaggctccgctttagattttgtggttggagtttgcttaactcagagtgtgagagactcttcgtcaaggtaaagttgaa-------aaa |
93 |
Q |
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||||||||||||||||||| | ||| |||| |||| |||||||| ||||||||| | |||| ||| || |||||||||||||| || || |
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| T |
41918893 |
tcttaccatggaaaggctcagttttggattccgtgggtggagttttcttaactcaaaatgtgtctgaccatttgtcaaggtaaagttaaatatatataat |
41918992 |
T |
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| Q |
94 |
taattaattaatttacccaaattttcattg--gctttgaatattaatactcactcttgtttctatagcaatgcatttatgtcacttgctgcga |
184 |
Q |
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| T |
41918993 |
taattaattaatttacccattttttttttgtggtgttgaatattaatactctctcttcttttcaaagctctgcatttatgtcacttgctgcga |
41919085 |
T |
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