View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5299_low_17 (Length: 221)
Name: NF5299_low_17
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 28789410 - 28789602
Alignment:
| Q |
19 |
ttagtagcaccgataccaggcctaccgtgcttaacaggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaactt |
118 |
Q |
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| T |
28789410 |
ttagtagcaccgataccaggcctaccgtgcttaaccggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaactt |
28789509 |
T |
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| Q |
119 |
gattgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgagtcttcacaggttctg |
211 |
Q |
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| T |
28789510 |
gattgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgattcctcactggttctg |
28789602 |
T |
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Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 31247997 - 31247811
Alignment:
| Q |
25 |
gcaccgataccaggcctaccgtgcttaacaggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaacttgattga |
124 |
Q |
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| T |
31247997 |
gcaccaataccaggcctaccatgcttaacaggcttgtaagagattgagaattcagccaaatagtgaccaatcatttcaggcttaatttcaacttggttga |
31247898 |
T |
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| Q |
125 |
aggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgagtcttcacaggttctg |
211 |
Q |
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| T |
31247897 |
aggtctttccattgtagacaccaatgatgctaccgatcatctcaggtacaatgatcatgttacggaggtgagtcctcacaggttctg |
31247811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 44325833 - 44326023
Alignment:
| Q |
21 |
agtagcaccgataccaggcctaccgtgcttaacaggcttgtaagagatcgagaattcagcaagatagtggccaatcatttcaggtttaatttcaacttga |
120 |
Q |
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| T |
44325833 |
agtagcaccaataccaggtctaccgtgcttaacaggcttgtatgaaattgagaattcagcaaggtaatgaccgatcatctcaggtttgatttcaacctgg |
44325932 |
T |
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| Q |
121 |
ttgaaggtctttccattgtagacaccaataatgctaccaatcatctcaggcacaatgatcatgttacggaggtgagtcttcacaggttctg |
211 |
Q |
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| T |
44325933 |
ttaaaggtcttcccattgtacactccaataatgctcccaatcatctcaggtacaatgatcatgttacgaagatgggtcctaacaggttctg |
44326023 |
T |
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