View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5299_low_3 (Length: 514)

Name: NF5299_low_3
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5299_low_3
NF5299_low_3
[»] chr6 (3 HSPs)
chr6 (10-498)||(35094082-35094570)
chr6 (412-484)||(32863427-32863499)
chr6 (413-463)||(14390477-14390527)
[»] chr5 (1 HSPs)
chr5 (412-482)||(43537569-43537639)
[»] chr3 (2 HSPs)
chr3 (412-486)||(47364805-47364879)
chr3 (412-450)||(13806144-13806182)
[»] chr8 (2 HSPs)
chr8 (412-489)||(35514546-35514623)
chr8 (266-411)||(42509285-42509430)
[»] chr7 (1 HSPs)
chr7 (409-451)||(10195349-10195391)


Alignment Details
Target: chr6 (Bit Score: 477; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 10 - 498
Target Start/End: Complemental strand, 35094570 - 35094082
Alignment:
Q  10 catcatcaaataataatacagacgagggttcggtaagatcacgcgcaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgaggga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35094570 catcatcaaataataatacagacgagggttcggtaagatcacgcacaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgaggga 35094471  T
Q  110 agaagtatcagcacaatttgatttgcaagatcttttgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35094470 agaagtatcagcacaatttgatttgcaagatcttttgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttg 35094371  T
Q  210 actggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35094370 actggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatc 35094271  T
Q  310 cgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacgg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35094270 cgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacgg 35094171  T
Q  410 tattttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttacaatttccgaaaaaag 498  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35094170 tattttcattttcacttcaactaataaacatcagagaatataagtttaatatttttcgcaccttttccttttacaatttccgaaaaaag 35094082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 484
Target Start/End: Original strand, 32863427 - 32863499
Alignment:
Q  412 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttaca 484  Q
    |||||||||| |||||||||||||||||| ||||||||||  || |||| | ||| |||| ||||||||||||    
T  32863427 ttttcatttttacttcaactaataaacatgatagaatatagattcaatactcttctcaccatttccttttaca 32863499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 463
Target Start/End: Original strand, 14390477 - 14390527
Alignment:
Q  413 tttcattttcacttcaactaataaacatcatagaatataagtttaatattt 463  Q
    ||||||||||||||||||||| |||||| ||| ||||||| || |||||||    
T  14390477 tttcattttcacttcaactaaaaaacatgatacaatataaattcaatattt 14390527  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 482
Target Start/End: Original strand, 43537569 - 43537639
Alignment:
Q  412 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttcctttta 482  Q
    |||||||||||||||||||||||||||||   ||||||||  ||||||||||||| |||| ||| ||||||    
T  43537569 ttttcattttcacttcaactaataaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 47364879 - 47364805
Alignment:
Q  412 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttacaat 486  Q
    ||||||||||||||||||||||||||||| | |||| |||| ||||||||||| | |||| ||| |||| |||||    
T  47364879 ttttcattttcacttcaactaataaacataaaagaaaataaatttaatattttcctcaccattttctttcacaat 47364805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 450
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
Q  412 ttttcattttcacttcaactaataaacatcatagaatat 450  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  13806182 ttttcattttcacttcaactaataaacataagagaatat 13806144  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 489
Target Start/End: Complemental strand, 35514623 - 35514546
Alignment:
Q  412 ttttcattttcacttcaactaataaacatcatagaatataagtttaatatttttcgcaccttttccttttacaatttc 489  Q
    |||| |||| ||||||||||||||||||| | |||||||| ||  || ||||||| |||| ||| |||||||||||||    
T  35514623 tttttatttccacttcaactaataaacataagagaatataggtccaacatttttcacaccattttcttttacaatttc 35514546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 411
Target Start/End: Original strand, 42509285 - 42509430
Alignment:
Q  266 agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc 365  Q
    ||||||||||||||| ||||||||  | ||||||||||| ||||| ||| |  ||||||| || |||||||| || | || ||| ||||| || ||  |     
T  42509285 agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt 42509384  T
Q  366 accgactttgttcccaatggaagcttggccgttcgccttcacggta 411  Q
    |||||||||||||  || || ||| | || ||||||||||| ||||    
T  42509385 accgactttgttcagaacggtagcctagctgttcgccttcatggta 42509430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 451
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
Q  409 gtattttcattttcacttcaactaataaacatcatagaatata 451  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||    
T  10195349 gtattttcattttcacttcaactaatagacatgataaaatata 10195391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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