View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5299_low_5 (Length: 480)

Name: NF5299_low_5
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5299_low_5
NF5299_low_5
[»] chr4 (8 HSPs)
chr4 (132-457)||(45893069-45893396)
chr4 (182-457)||(48665310-48665590)
chr4 (182-456)||(21800811-21801090)
chr4 (22-125)||(45894472-45894575)
chr4 (185-303)||(49421225-49421339)
chr4 (22-124)||(55661412-55661514)
chr4 (414-457)||(12583630-12583673)
chr4 (370-435)||(49421114-49421179)
[»] chr2 (3 HSPs)
chr2 (181-450)||(36657890-36658158)
chr2 (182-243)||(29463346-29463407)
chr2 (371-433)||(20361535-20361597)
[»] chr7 (11 HSPs)
chr7 (185-457)||(23772906-23773181)
chr7 (182-397)||(26469658-26469869)
chr7 (182-397)||(26546130-26546341)
chr7 (181-271)||(12119386-12119473)
chr7 (370-443)||(12119549-12119621)
chr7 (344-443)||(22859649-22859747)
chr7 (392-457)||(26469940-26470005)
chr7 (392-457)||(26546380-26546445)
chr7 (346-447)||(11275814-11275915)
chr7 (349-430)||(48433880-48433961)
chr7 (349-433)||(2198207-2198291)
[»] chr3 (1 HSPs)
chr3 (181-441)||(6000317-6000574)
[»] scaffold0219 (1 HSPs)
scaffold0219 (235-452)||(6324-6533)
[»] chr6 (1 HSPs)
chr6 (181-445)||(23660777-23661046)
[»] scaffold0527 (3 HSPs)
scaffold0527 (324-457)||(3705-3838)
scaffold0527 (391-457)||(11768-11834)
scaffold0527 (248-313)||(3824-3889)
[»] chr1 (5 HSPs)
chr1 (22-125)||(24435246-24435350)
chr1 (351-457)||(16180881-16180990)
chr1 (335-436)||(9004805-9004907)
chr1 (198-236)||(9004696-9004734)
chr1 (76-125)||(42344733-42344782)
[»] chr5 (2 HSPs)
chr5 (27-125)||(7114943-7115043)
chr5 (185-241)||(32538642-32538698)
[»] chr8 (2 HSPs)
chr8 (211-306)||(923310-923403)
chr8 (344-435)||(923420-923512)
[»] scaffold0445 (1 HSPs)
scaffold0445 (181-229)||(7112-7160)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 132 - 457
Target Start/End: Complemental strand, 45893396 - 45893069
Alignment:
Q  132 aaactaataatttagagccgatggataacttaactggtttgatagatcaaactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttca 231  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  45893396 aaactaataatttagagccgttggataacttaactggtttgatagatcaaactagtgtgttaacccgtgcaatgcgcgggtgatagactattatttttca 45893297  T
Q  232 atctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaata--atgtta 329  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  45893296 atctcaaattgtgtttattttatttatttattgatgaaaagcatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataatatgtta 45893197  T
Q  330 gtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatat 429  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893196 gtatttttttgcctcaatgatgacaaatatgtgtcacatgttttcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatat 45893097  T
Q  430 atttataggtttcagatcgtcgttgatg 457  Q
    ||||||||||||||||||||||||||||    
T  45893096 atttataggtttcagatcgtcgttgatg 45893069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 182 - 457
Target Start/End: Original strand, 48665310 - 48665590
Alignment:
Q  182 actagtgtgttaacctgtgcaat----gctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatct 277  Q
    ||||||||||||||| |||||||    ||  ||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||     
T  48665310 actagtgtgttaacccgtgcaattaatgcatgggtgataggctattatttttcaatctcaaattgtatt-attttatttattttttgatgaaaaacatcc 48665408  T
Q  278 acgcaccgtgaatttttaaatatgtcagtatttttt-gttaaaaataa--tgttagtattttttagcctcaatgatgacaaatatgtgtcacatgttttt 374  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  48665409 acgcaccgtgaatttttaaatatgtcagtatttttttgttaaaaataacatgttagtatttttt-gccgcaatgatgacaaatatgtgtcacatgttttt 48665507  T
Q  375 atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 457  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  48665508 atgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatatttatgggttttagatcgtcgtcgatg 48665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 182 - 456
Target Start/End: Original strand, 21800811 - 21801090
Alignment:
Q  182 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 281  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||| ||       
T  21800811 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttatttt-tttatttattgaagaaaattattta--t 21800906  T
Q  282 accgtgaatttttaaatatgtcagtattttttgttaaaaata--atgttagtattttt---tagcctcaatgatgacaaatatgtgtcacatg-----tt 371  Q
     | ||||||||||||||||||||||||||||||| |||||||  || |||| ||||||   | ||| ||||||||| ||||||||||||||||     ||    
T  21800907 cctgtgaatttttaaatatgtcagtattttttgtcaaaaataatattttagaatttttttattgccacaatgatgataaatatgtgtcacatgtttcttt 21801006  T
Q  372 tttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgat 456  Q
    ||||||||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  21801007 tttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgat 21801090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 22 - 125
Target Start/End: Complemental strand, 45894575 - 45894472
Alignment:
Q  22 aaattttcattccttaaacaactttatataagcaaattccatcatggtttgatttatgagcacctttatattaatcttatcggcttcatccaagctaaca 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||    
T  45894575 aaattttcattccttaaacaactttatataagcaaattccatcatggtttgatttatgagcacctttatataaatcttgtcggtttcatccaaactaaca 45894476  T
Q  122 catg 125  Q
    ||||    
T  45894475 catg 45894472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 303
Target Start/End: Complemental strand, 49421339 - 49421225
Alignment:
Q  185 agtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcacc 284  Q
    |||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||| ||    ||    
T  49421339 agtgtgttaacccgcgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttatttt-tttatttatcgatgaaaattattta--tccc 49421244  T
Q  285 gtgaatttttaaatatgtc 303  Q
    |||||||||||||||||||    
T  49421243 gtgaatttttaaatatgtc 49421225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 55661514 - 55661412
Alignment:
Q  22 aaattttcattccttaaacaactttatataagcaaattccatcatggtttgatttatgagcacctttatattaatcttatcggcttcatccaagctaaca 121  Q
    ||||||||||||||||||||||||| || || ||||||| || ||| |||||||||||| ||||| ||||  ||| || |||||||| | ||||||||||    
T  55661514 aaattttcattccttaaacaactttttacaaacaaattcaataatgatttgatttatgaccacctctatagcaatattgtcggcttctttcaagctaaca 55661415  T
Q  122 cat 124  Q
    |||    
T  55661414 cat 55661412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 414 - 457
Target Start/End: Complemental strand, 12583673 - 12583630
Alignment:
Q  414 tataaatgaaaaatatatttataggtttcagatcgtcgttgatg 457  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatg 12583630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 435
Target Start/End: Complemental strand, 49421179 - 49421114
Alignment:
Q  370 tttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttat 435  Q
    ||||||||||||| | || |||| ||||||| ||| |||||||| ||||| |||||||||||||||    
T  49421179 tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttat 49421114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 181 - 450
Target Start/End: Original strand, 36657890 - 36658158
Alignment:
Q  181 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacg 280  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||    
T  36657890 aactagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttattttatttatttattaatgaaaagtatctacg 36657988  T
Q  281 caccgtgaatttttaaatatgtcagtattttttgttaaaaataatgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgttt 380  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  36657989 caccatgaatttttaaatatgtcagtatttttggttaaaaataatgttagtatttttttgccacaatgatgacaaatatgtgtcacatgtttttatgttt 36658088  T
Q  381 atcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtc 450  Q
    |||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  36658089 atcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatatttatgggtttcagatcgtc 36658158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 29463346 - 29463407
Alignment:
Q  182 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgt 243  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||    
T  29463346 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttatcaatcttaaattgt 29463407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 433
Target Start/End: Complemental strand, 20361597 - 20361535
Alignment:
Q  371 ttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 433  Q
    |||||||||||| | |  ||||||||||||  |||||||||||||||| ||||||||||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaaatatattt 20361535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 185 - 457
Target Start/End: Original strand, 23772906 - 23773181
Alignment:
Q  185 agtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcacc 284  Q
    |||||||||| | ||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |    
T  23772906 agtgtgttaatccgtgcaatgcacgtgtgatagactattatttttcaatctcaaattat-tttattttatttatttattgatgaaaagtatctacgcagc 23773004  T
Q  285 gtgaatttttaaatatgtcagtattt-tttgttaaaaataat--gttagtatttttta-gcctcaatgatgacaaatatgtgtcacatgtttttatgttt 380  Q
    |||||| |||||||||||||||||   |||||||||||||||  |||| ||||||||  ||| |||||||||||||||||||||||| ||||||||||||    
T  23773005 gtgaatatttaaatatgtcagtatagatttgttaaaaataatatgttaatattttttttgccgcaatgatgacaaatatgtgtcacaggtttttatgttt 23773104  T
Q  381 atcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 457  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  23773105 atcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgagtttcagatcgtcgtcgatg 23773181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 182 - 397
Target Start/End: Original strand, 26469658 - 26469869
Alignment:
Q  182 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 281  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||||||||||||| | ||       |||| ||| ||||||||||||||  ||||||||    
T  26469658 actagtgtgttaacccttgcgatgcacgggtgatagactattatttttcaatctctattt-------ttttcttt-tttattgatgaaaagcatctacgc 26469749  T
Q  282 accgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttatg 377  Q
    ||| |||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26469750 accatgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttatg 26469849  T
Q  378 tttatcaatggtaaatatat 397  Q
    ||||||| ||||||||||||    
T  26469850 tttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 182 - 397
Target Start/End: Original strand, 26546130 - 26546341
Alignment:
Q  182 actagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 281  Q
    |||||||||||||||  ||| |||| ||||||||||||||||||||||||||||| | ||       |||| ||| ||||||||||||||  ||||||||    
T  26546130 actagtgtgttaacccttgcgatgcacgggtgatagactattatttttcaatctctattt-------ttttcttt-tttattgatgaaaagcatctacgc 26546221  T
Q  282 accgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttatg 377  Q
    ||| |||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  26546222 accatgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttatg 26546321  T
Q  378 tttatcaatggtaaatatat 397  Q
    ||||||| ||||||||||||    
T  26546322 tttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 12119386 - 12119473
Alignment:
Q  181 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaa 271  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||  |||||| ||||||||||||||||||||||    
T  12119386 aactagtgtgttaacctgtacaatgcacgggtgataaactattattttt-aatctcaaat--tgtttaatttatttatttattgatgaaaa 12119473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 12119549 - 12119621
Alignment:
Q  370 tttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttca 443  Q
    ||||||||||||| | || |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  12119549 tttttatgtttattattgataaatatatgtcccatgtttt-atgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 443
Target Start/End: Original strand, 22859649 - 22859747
Alignment:
Q  344 caatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtg-tttttatgtataaatgaaaaatatatttataggtttc 442  Q
    ||||||| | ||||||||||||||| |||||||||||||  ||| | ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||    
T  22859649 caatgataataaatatgtgtcacat-tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatg-aaaatatatttatgggtttc 22859746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 26469940 - 26470005
Alignment:
Q  392 atatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 457  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatg 26470005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 26546380 - 26546445
Alignment:
Q  392 atatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 457  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatg 26546445  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 447
Target Start/End: Original strand, 11275814 - 11275915
Alignment:
Q  346 atgatgacaaatatgtgtcacatgt-ttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcag 444  Q
    ||||||||||||||||||| ||| | ||||| |||||| | || ||||||||||||  || |||||||| ||||| ||||||||||||||  | ||||||    
T  11275814 atgatgacaaatatgtgtctcatatcttttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatttcag 11275912  T
Q  445 atc 447  Q
    |||    
T  11275913 atc 11275915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 48433880 - 48433961
Alignment:
Q  349 atgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatata 430  Q
    ||||||||||||| ||  || ||||||||||||| | || ||||  ||||||||||||||||||| || | |||||||||||    
T  48433880 atgacaaatatgtatcctatatttttatgtttattagtgataaacttatgtcccgtgtttttatgcatcagtgaaaaatata 48433961  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 433
Target Start/End: Complemental strand, 2198291 - 2198207
Alignment:
Q  349 atgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 433  Q
    ||||||||||||| ||  || ||||||||||||| | || || ||||||||| | |||||||||| ||   ||||||||||||||    
T  2198291 atgacaaatatgtatcctatatttttatgtttattagtgctagatatatgtctcatgtttttatgcatctgtgaaaaatatattt 2198207  T

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Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 181 - 441
Target Start/End: Complemental strand, 6000574 - 6000317
Alignment:
Q  181 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacg 280  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||||||| ||       |||||||| ||||||||||||||  ||||| |    
T  6000574 aactagtgtgttaacctgtgcaatgcacgagtgataaactattatttttcaatctcaattt-------ttttatttttttattgatgaaaagcatctatg 6000482  T
Q  281 caccgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttat 376  Q
    ||||||||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  6000481 caccgtgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttat 6000382  T
Q  377 gtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggttt 441  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  6000381 gtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatatttatgggttt 6000317  T

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Target: scaffold0219 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 235 - 452
Target Start/End: Complemental strand, 6533 - 6324
Alignment:
Q  235 tcaaattgtgtttattttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataat--gttagta 332  Q
    ||||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||         ||||||||||||||  |||||||    
T  6533 tcaaattgt-tttattttatttatttattgatgaaaagcacctacgcaccgtgaatttttaaatatgt---------ttgttaaaaataatatgttagta 6444  T
Q  333 ttttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatt 432  Q
    |||||| ||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6443 tttttttgctacaatgatgacaaatatgtgtcacatgtttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatt 6344  T
Q  433 tataggtttcagatcgtcgt 452  Q
    ||  ||||||||||||||||    
T  6343 tacgggtttcagatcgtcgt 6324  T

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Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 181 - 445
Target Start/End: Original strand, 23660777 - 23661046
Alignment:
Q  181 aactagtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaattgtgtttatt-ttattt-atttattgatgaaaaatatcta 278  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||  |||  |||||    
T  23660777 aactagtgcgttaaccggtgcaatgcacgggtgatagactattatttttctatctcaaattgt-tttattattattttatttattgattgaaagcatcta 23660875  T
Q  279 cgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataat--gttagtattttttag--cctcaatgatgacaaatatgtgtcacatgttttt 374  Q
    | || ||||||||||||| ||||| ||||||||||||||||||||||  |||||| ||||||    || ||||||||| |||||||||||||||||||||    
T  23660876 cacatcgtgaatttttaactatgtaagtattttttgttaaaaataatatgttagttttttttcttcccgcaatgatgagaaatatgtgtcacatgttttt 23660975  T
Q  375 atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcaga 445  Q
    |||||||||| || ||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23660976 atgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatgggtttcaga 23661046  T

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Target: scaffold0527 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 324 - 457
Target Start/End: Complemental strand, 3838 - 3705
Alignment:
Q  324 atgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaa 423  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3838 atgtcagtatttttttgccgcaatgatgacaaatatgtgtcacatgtttttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaa 3739  T
Q  424 aaatatatttataggtttcagatcgtcgttgatg 457  Q
    |||||||||||| ||||| |||||||||| ||||    
T  3738 aaatatatttatgggttttagatcgtcgtcgatg 3705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 11834 - 11768
Alignment:
Q  391 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 457  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatg 11768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 3889 - 3824
Alignment:
Q  248 attttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtatttttt 313  Q
    ||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3889 attttttttatttatcgatgaaaagcatctacgcaccgtgaatttttaaatatgtcagtatttttt 3824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 24435246 - 24435350
Alignment:
Q  22 aaattttcattccttaaacaactttatataagcaaattccatcatggtttgatttatgagcacctttatattaa-tcttatcggcttcatccaagctaac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  24435246 aaattttcattccttaaacaactttatataagcaaattccatcatggtttgatttatgagcacctttatattaagtcttgtcggtttcatccaagctaac 24435345  T
Q  121 acatg 125  Q
    |||||    
T  24435346 acatg 24435350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 457
Target Start/End: Complemental strand, 16180990 - 16180881
Alignment:
Q  351 gacaaatatgtgtcacatgttttt---atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatc 447  Q
    ||||||||||||||||||||||||   |||||||| | || ||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||    
T  16180990 gacaaatatgtgtcacatgttttttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcagatc 16180891  T
Q  448 gtcgttgatg 457  Q
    ||||| ||||    
T  16180890 gtcgtcgatg 16180881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 9004805 - 9004907
Alignment:
Q  335 ttttagcctcaatgatgacaaatatgtgtcacatgttttt-atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 433  Q
    |||| ||| ||||||||||||||| | ||| ||| ||||| |||| ||| | || |||||||||||| | |||||||||| |||||||| ||||||||||    
T  9004805 tttttgccgcaatgatgacaaatacgcgtcccatattttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatattt 9004904  T
Q  434 ata 436  Q
    |||    
T  9004905 ata 9004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 9004696 - 9004734
Alignment:
Q  198 gtgcaatgctcgggtgatagactattatttttcaatctc 236  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  9004696 gtgcaatgcacgggtgatagactattattttttaatctc 9004734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 42344733 - 42344782
Alignment:
Q  76 tatgagcacctttatattaatcttatcggcttcatccaagctaacacatg 125  Q
    ||||||||||| ||||| |||||| |||| ||| ||||||||||||||||    
T  42344733 tatgagcacctctatatcaatcttgtcggattcttccaagctaacacatg 42344782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 7114943 - 7115043
Alignment:
Q  27 ttcattccttaaacaactttatataagcaaatt--ccatcatggtttgatttatgagcacctttatattaatcttatcggcttcatccaagctaacacat 124  Q
    ||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7114943 ttcattcgttaaacaactttatataagcaaattttccatcatagtttgatttatgagcacctttatattaatcttgtcggcttcatccaagctaacacat 7115042  T
Q  125 g 125  Q
    |    
T  7115043 g 7115043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 32538698 - 32538642
Alignment:
Q  185 agtgtgttaacctgtgcaatgctcgggtgatagactattatttttcaatctcaaatt 241  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  32538698 agtgtgttaacttgtgcaatgcacgggtgatagactattatttttcaatctcaaatt 32538642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 306
Target Start/End: Original strand, 923310 - 923403
Alignment:
Q  211 gtgatagactattatttttcaatctcaaattgtgtttattt-tatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagt 306  Q
    ||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||| |||||||| ||     |||||||||||||||||||||||    
T  923310 gtgatagactattatttttcaatttcaaattgt-tttatttatttttatttattgatcaaaaatattta--tttcgtgaatttttaaatatgtcagt 923403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 923420 - 923512
Alignment:
Q  344 caatgatgacaaatatgtgtcacatgtttt---tatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttat 435  Q
    |||||||||||||||||| |||||||||||   ||||||||| | || ||||||||||||| ||| |||||||| |||||| |||||||||||||    
T  923420 caatgatgacaaatatgt-tcacatgttttttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatg-aaaatatatttat 923512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 7160 - 7112
Alignment:
Q  181 aactagtgtgttaacctgtgcaatgctcgggtgatagactattattttt 229  Q
    |||||||||||||||  ||||||||| |||||||||||||||| |||||    
T  7160 aactagtgtgttaactcgtgcaatgcacgggtgatagactatttttttt 7112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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