View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5299_low_6 (Length: 396)

Name: NF5299_low_6
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5299_low_6
NF5299_low_6
[»] chr4 (7 HSPs)
chr4 (98-373)||(45893069-45893346)
chr4 (96-373)||(48665308-48665590)
chr4 (3-372)||(21800718-21801090)
chr4 (101-219)||(49421225-49421339)
chr4 (330-373)||(12583630-12583673)
chr4 (95-129)||(14269596-14269630)
chr4 (286-351)||(49421114-49421179)
[»] chr2 (3 HSPs)
chr2 (98-366)||(36657891-36658158)
chr2 (95-159)||(29463343-29463407)
chr2 (287-349)||(20361535-20361597)
[»] chr7 (13 HSPs)
chr7 (101-373)||(23772906-23773181)
chr7 (97-313)||(26469657-26469869)
chr7 (97-313)||(26546129-26546341)
chr7 (98-187)||(12119387-12119473)
chr7 (286-359)||(12119549-12119621)
chr7 (260-359)||(22859649-22859747)
chr7 (308-373)||(26469940-26470005)
chr7 (308-373)||(26546380-26546445)
chr7 (262-363)||(11275814-11275915)
chr7 (265-346)||(48433880-48433961)
chr7 (97-145)||(11275747-11275795)
chr7 (95-125)||(46463667-46463697)
chr7 (265-349)||(2198207-2198291)
[»] chr3 (2 HSPs)
chr3 (98-357)||(6000317-6000573)
chr3 (97-145)||(11217948-11217996)
[»] chr6 (1 HSPs)
chr6 (98-361)||(23660778-23661046)
[»] scaffold0219 (1 HSPs)
scaffold0219 (151-368)||(6324-6533)
[»] scaffold0527 (3 HSPs)
scaffold0527 (240-373)||(3705-3838)
scaffold0527 (307-373)||(11768-11834)
scaffold0527 (164-229)||(3824-3889)
[»] chr1 (3 HSPs)
chr1 (267-373)||(16180881-16180990)
chr1 (251-352)||(9004805-9004907)
chr1 (114-152)||(9004696-9004734)
[»] chr5 (2 HSPs)
chr5 (101-157)||(32538642-32538698)
chr5 (98-126)||(30739538-30739566)
[»] chr8 (2 HSPs)
chr8 (127-222)||(923310-923403)
chr8 (260-351)||(923420-923512)
[»] scaffold0445 (1 HSPs)
scaffold0445 (98-145)||(7112-7159)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 98 - 373
Target Start/End: Complemental strand, 45893346 - 45893069
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  45893346 actagtgtgttaacccgtgcaatgcgcgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaagcatctacgc 45893247  T
Q  198 accgtgaatttttaaatatgtcagtattttttgttaaaaata--atgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtt 295  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  45893246 accgtgaatttttaaatatgtcagtattttttgttaaaaataatatgttagtatttttttgcctcaatgatgacaaatatgtgtcacatgttttcatgtt 45893147  T
Q  296 tatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45893146 tatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 45893069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 96 - 373
Target Start/End: Original strand, 48665308 - 48665590
Alignment:
Q  96 atactagtgtgttaacccgtgcaat----gcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatat 191  Q
    |||||||||||||||||||||||||    ||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||| ||    
T  48665308 atactagtgtgttaacccgtgcaattaatgcatgggtgataggctattatttttcaatctcaaattgtatt-attttatttattttttgatgaaaaacat 48665406  T
Q  192 ctacgcaccgtgaatttttaaatatgtcagtatttttt-gttaaaaataa--tgttagtattttttagcctcaatgatgacaaatatgtgtcacatgttt 288  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  48665407 ccacgcaccgtgaatttttaaatatgtcagtatttttttgttaaaaataacatgttagtatttttt-gccgcaatgatgacaaatatgtgtcacatgttt 48665505  T
Q  289 ttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  48665506 ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatatttatgggttttagatcgtcgtcgatg 48665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 3 - 372
Target Start/End: Original strand, 21800718 - 21801090
Alignment:
Q  3 gatgtcgaaaaatatacacctcgaacttggagtgtacaannnnnnnnnnaattaacaacttattaaataatatatttattacttgcatgtactatactag 102  Q
    |||| |||| ||||| |||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21800718 gatgccgaataatattcacctcgaacttggagtgtacaatttttttt--aattaacaacttattgaataatatatttattacttgcatgtactatactag 21800815  T
Q  103 tgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcaccgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||| ||    | ||    
T  21800816 tgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttatttt-tttatttattgaagaaaattattta--tcctgt 21800911  T
Q  203 gaatttttaaatatgtcagtattttttgttaaaaata--atgttagtattttt---tagcctcaatgatgacaaatatgtgtcacatg-----tttttat 292  Q
    ||||||||||||||||||||||||||||| |||||||  || |||| ||||||   | ||| ||||||||| ||||||||||||||||     |||||||    
T  21800912 gaatttttaaatatgtcagtattttttgtcaaaaataatattttagaatttttttattgccacaatgatgataaatatgtgtcacatgtttcttttttat 21801011  T
Q  293 gtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgat 372  Q
    |||||| | ||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||  |||||||    
T  21801012 gtttattagtggtaaatatatgttacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgat 21801090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 49421339 - 49421225
Alignment:
Q  101 agtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcacc 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||| ||    ||    
T  49421339 agtgtgttaacccgcgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttatttt-tttatttatcgatgaaaattattta--tccc 49421244  T
Q  201 gtgaatttttaaatatgtc 219  Q
    |||||||||||||||||||    
T  49421243 gtgaatttttaaatatgtc 49421225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 373
Target Start/End: Complemental strand, 12583673 - 12583630
Alignment:
Q  330 tataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    |||||||||||||||||||||| |||||||||||||||| ||||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatg 12583630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 14269630 - 14269596
Alignment:
Q  95 tatactagtgtgttaacccgtgcaatgcacgggtg 129  Q
    |||||||||||||||||||||||||||||||||||    
T  14269630 tatactagtgtgttaacccgtgcaatgcacgggtg 14269596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 49421179 - 49421114
Alignment:
Q  286 tttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttat 351  Q
    ||||||||||||| | || |||| ||||||| ||| |||||||| ||||| |||||||||||||||    
T  49421179 tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttat 49421114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 98 - 366
Target Start/End: Original strand, 36657891 - 36658158
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  36657891 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt-tttattttatttatttattaatgaaaagtatctacgc 36657989  T
Q  198 accgtgaatttttaaatatgtcagtattttttgttaaaaataatgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgttta 297  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  36657990 accatgaatttttaaatatgtcagtatttttggttaaaaataatgttagtatttttttgccacaatgatgacaaatatgtgtcacatgtttttatgttta 36658089  T
Q  298 tcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtc 366  Q
    ||| || ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  36658090 tcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatatttatgggtttcagatcgtc 36658158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 29463343 - 29463407
Alignment:
Q  95 tatactagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  29463343 tatactagtgtgttaacccgtgcaatgcacgggtgatagactattatttatcaatcttaaattgt 29463407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 349
Target Start/End: Complemental strand, 20361597 - 20361535
Alignment:
Q  287 ttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 349  Q
    |||||||||||| | |  ||||||||||||  |||||||||||||||| ||||||||||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaaatatattt 20361535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 7e-96; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 101 - 373
Target Start/End: Original strand, 23772906 - 23773181
Alignment:
Q  101 agtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgcacc 200  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| |    
T  23772906 agtgtgttaatccgtgcaatgcacgtgtgatagactattatttttcaatctcaaattat-tttattttatttatttattgatgaaaagtatctacgcagc 23773004  T
Q  201 gtgaatttttaaatatgtcagtattt-tttgttaaaaataat--gttagtatttttta-gcctcaatgatgacaaatatgtgtcacatgtttttatgttt 296  Q
    |||||| |||||||||||||||||   |||||||||||||||  |||| ||||||||  ||| |||||||||||||||||||||||| ||||||||||||    
T  23773005 gtgaatatttaaatatgtcagtatagatttgttaaaaataatatgttaatattttttttgccgcaatgatgacaaatatgtgtcacaggtttttatgttt 23773104  T
Q  297 atcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  23773105 atcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgagtttcagatcgtcgtcgatg 23773181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 26469657 - 26469869
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacg 196  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||       |||| ||| ||||||||||||||  |||||||    
T  26469657 tactagtgtgttaacccttgcgatgcacgggtgatagactattatttttcaatctctattt-------ttttcttt-tttattgatgaaaagcatctacg 26469748  T
Q  197 caccgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttat 292  Q
    |||| |||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  26469749 caccatgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttat 26469848  T
Q  293 gtttatcaatggtaaatatat 313  Q
    |||||||| ||||||||||||    
T  26469849 gtttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 26546129 - 26546341
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacg 196  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||       |||| ||| ||||||||||||||  |||||||    
T  26546129 tactagtgtgttaacccttgcgatgcacgggtgatagactattatttttcaatctctattt-------ttttcttt-tttattgatgaaaagcatctacg 26546220  T
Q  197 caccgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttat 292  Q
    |||| |||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  26546221 caccatgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttat 26546320  T
Q  293 gtttatcaatggtaaatatat 313  Q
    |||||||| ||||||||||||    
T  26546321 gtttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 12119387 - 12119473
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaa 187  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||||  |||||| ||||||||||||||||||||||    
T  12119387 actagtgtgttaacctgtacaatgcacgggtgataaactattattttt-aatctcaaat--tgtttaatttatttatttattgatgaaaa 12119473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 12119549 - 12119621
Alignment:
Q  286 tttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttca 359  Q
    ||||||||||||| | || |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  12119549 tttttatgtttattattgataaatatatgtcccatgtttt-atgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 22859649 - 22859747
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtg-tttttatgtataaatgaaaaatatatttataggtttc 358  Q
    ||||||| | ||||||||||||||| |||||||||||||  ||| | ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||    
T  22859649 caatgataataaatatgtgtcacat-tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatg-aaaatatatttatgggtttc 22859746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 26469940 - 26470005
Alignment:
Q  308 atatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatg 26470005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 26546380 - 26546445
Alignment:
Q  308 atatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatg 26546445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 363
Target Start/End: Original strand, 11275814 - 11275915
Alignment:
Q  262 atgatgacaaatatgtgtcacatgt-ttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcag 360  Q
    ||||||||||||||||||| ||| | ||||| |||||| | || ||||||||||||  || |||||||| ||||| ||||||||||||||  | ||||||    
T  11275814 atgatgacaaatatgtgtctcatatcttttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatttcag 11275912  T
Q  361 atc 363  Q
    |||    
T  11275913 atc 11275915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 48433880 - 48433961
Alignment:
Q  265 atgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatata 346  Q
    ||||||||||||| ||  || ||||||||||||| | || ||||  ||||||||||||||||||| || | |||||||||||    
T  48433880 atgacaaatatgtatcctatatttttatgtttattagtgataaacttatgtcccgtgtttttatgcatcagtgaaaaatata 48433961  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 11275747 - 11275795
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacgggtgatagactattattttt 145  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||||||||||    
T  11275747 tactagtgtgttaacacgtacaatgcatgggtcatagactattattttt 11275795  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 125
Target Start/End: Complemental strand, 46463697 - 46463667
Alignment:
Q  95 tatactagtgtgttaacccgtgcaatgcacg 125  Q
    |||||||||||||||||||||||||||||||    
T  46463697 tatactagtgtgttaacccgtgcaatgcacg 46463667  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 349
Target Start/End: Complemental strand, 2198291 - 2198207
Alignment:
Q  265 atgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 349  Q
    ||||||||||||| ||  || ||||||||||||| | || || ||||||||| | |||||||||| ||   ||||||||||||||    
T  2198291 atgacaaatatgtatcctatatttttatgtttattagtgctagatatatgtctcatgtttttatgcatctgtgaaaaatatattt 2198207  T

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Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 98 - 357
Target Start/End: Complemental strand, 6000573 - 6000317
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttattttatttatttattgatgaaaaatatctacgc 197  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||| ||       |||||||| ||||||||||||||  ||||| ||    
T  6000573 actagtgtgttaacctgtgcaatgcacgagtgataaactattatttttcaatctcaattt-------ttttatttttttattgatgaaaagcatctatgc 6000481  T
Q  198 accgtgaatttttaaatatgtcagtatt-ttttgttaaaaataat--gttagtatttttt-agcctcaatgatgacaaatatgtgtcacatgtttttatg 293  Q
    |||||||||||| |||||||||| |||| ||||||||||||||||  |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  6000480 accgtgaattttgaaatatgtcaatattgttttgttaaaaataatatgttaatatttttttagccacaatgatgacaaatatgtgtcacatgtttttatg 6000381  T
Q  294 tttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggttt 357  Q
    ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||    
T  6000380 tttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatatttatgggttt 6000317  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 11217996 - 11217948
Alignment:
Q  97 tactagtgtgttaacccgtgcaatgcacgggtgatagactattattttt 145  Q
    ||||||||||||||||||||||||||||||| | ||| ||||| |||||    
T  11217996 tactagtgtgttaacccgtgcaatgcacgggcgctaggctattgttttt 11217948  T

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Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 98 - 361
Target Start/End: Original strand, 23660778 - 23661046
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaattgtgtttatt-ttattt-atttattgatgaaaaatatctac 195  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||  |||  ||||||    
T  23660778 actagtgcgttaaccggtgcaatgcacgggtgatagactattatttttctatctcaaattgt-tttattattattttatttattgattgaaagcatctac 23660876  T
Q  196 gcaccgtgaatttttaaatatgtcagtattttttgttaaaaataat--gttagtattttttag--cctcaatgatgacaaatatgtgtcacatgttttta 291  Q
     || ||||||||||||| ||||| ||||||||||||||||||||||  |||||| ||||||    || ||||||||| ||||||||||||||||||||||    
T  23660877 acatcgtgaatttttaactatgtaagtattttttgttaaaaataatatgttagttttttttcttcccgcaatgatgagaaatatgtgtcacatgttttta 23660976  T
Q  292 tgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcaga 361  Q
    ||||||||| || ||||||||| ||| | ||||||||||||||||||||||||||||||| |||||||||    
T  23660977 tgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatgggtttcaga 23661046  T

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Target: scaffold0219 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 151 - 368
Target Start/End: Complemental strand, 6533 - 6324
Alignment:
Q  151 tcaaattgtgtttattttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtattttttgttaaaaataat--gttagta 248  Q
    ||||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||         ||||||||||||||  |||||||    
T  6533 tcaaattgt-tttattttatttatttattgatgaaaagcacctacgcaccgtgaatttttaaatatgt---------ttgttaaaaataatatgttagta 6444  T
Q  249 ttttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatt 348  Q
    |||||| ||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6443 tttttttgctacaatgatgacaaatatgtgtcacatgtttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatt 6344  T
Q  349 tataggtttcagatcgtcgt 368  Q
    ||  ||||||||||||||||    
T  6343 tacgggtttcagatcgtcgt 6324  T

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Target: scaffold0527 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 3838 - 3705
Alignment:
Q  240 atgttagtattttttagcctcaatgatgacaaatatgtgtcacatgtttttatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaa 339  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  3838 atgtcagtatttttttgccgcaatgatgacaaatatgtgtcacatgtttttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaa 3739  T
Q  340 aaatatatttataggtttcagatcgtcgttgatg 373  Q
    |||||||||||| ||||| |||||||||| ||||    
T  3738 aaatatatttatgggttttagatcgtcgtcgatg 3705  T

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Target: scaffold0527; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 11834 - 11768
Alignment:
Q  307 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatcgtcgttgatg 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatg 11768  T

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Target: scaffold0527; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 3889 - 3824
Alignment:
Q  164 attttatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagtatttttt 229  Q
    ||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  3889 attttttttatttatcgatgaaaagcatctacgcaccgtgaatttttaaatatgtcagtatttttt 3824  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 16180990 - 16180881
Alignment:
Q  267 gacaaatatgtgtcacatgttttt---atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttataggtttcagatc 363  Q
    ||||||||||||||||||||||||   |||||||| | || ||||||||||||||||||||||||||||||||||||||| | |  || |||||||||||    
T  16180990 gacaaatatgtgtcacatgttttttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcagatc 16180891  T
Q  364 gtcgttgatg 373  Q
    ||||| ||||    
T  16180890 gtcgtcgatg 16180881  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 9004805 - 9004907
Alignment:
Q  251 ttttagcctcaatgatgacaaatatgtgtcacatgttttt-atgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatattt 349  Q
    |||| ||| ||||||||||||||| | ||| ||| ||||| |||| ||| | || |||||||||||| | |||||||||| |||||||| ||||||||||    
T  9004805 tttttgccgcaatgatgacaaatacgcgtcccatattttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatattt 9004904  T
Q  350 ata 352  Q
    |||    
T  9004905 ata 9004907  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 9004696 - 9004734
Alignment:
Q  114 gtgcaatgcacgggtgatagactattatttttcaatctc 152  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9004696 gtgcaatgcacgggtgatagactattattttttaatctc 9004734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 32538698 - 32538642
Alignment:
Q  101 agtgtgttaacccgtgcaatgcacgggtgatagactattatttttcaatctcaaatt 157  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  32538698 agtgtgttaacttgtgcaatgcacgggtgatagactattatttttcaatctcaaatt 32538642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 30739538 - 30739566
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgg 126  Q
    |||||||||||||||||||||||||||||    
T  30739538 actagtgtgttaacccgtgcaatgcacgg 30739566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 923310 - 923403
Alignment:
Q  127 gtgatagactattatttttcaatctcaaattgtgtttattt-tatttatttattgatgaaaaatatctacgcaccgtgaatttttaaatatgtcagt 222  Q
    ||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||||| |||||||| ||     |||||||||||||||||||||||    
T  923310 gtgatagactattatttttcaatttcaaattgt-tttatttatttttatttattgatcaaaaatattta--tttcgtgaatttttaaatatgtcagt 923403  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 351
Target Start/End: Original strand, 923420 - 923512
Alignment:
Q  260 caatgatgacaaatatgtgtcacatgtttt---tatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttat 351  Q
    |||||||||||||||||| |||||||||||   ||||||||| | || ||||||||||||| ||| |||||||| |||||| |||||||||||||    
T  923420 caatgatgacaaatatgt-tcacatgttttttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatg-aaaatatatttat 923512  T

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Target: scaffold0445 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 7159 - 7112
Alignment:
Q  98 actagtgtgttaacccgtgcaatgcacgggtgatagactattattttt 145  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||    
T  7159 actagtgtgttaactcgtgcaatgcacgggtgatagactatttttttt 7112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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