View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5299_low_7 (Length: 344)
Name: NF5299_low_7
Description: NF5299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5299_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 12196765 - 12197017
Alignment:
| Q |
1 |
ctgctcgcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttct |
100 |
Q |
| |
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||||| |||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12196765 |
ctgctagcattgcaaaatgcaccaattaaccatcactag----ttcatcatcaccagttacctgacagtcttctgaacttcttggaatttgtctgtttct |
12196860 |
T |
|
| Q |
101 |
ttgtggtctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12196861 |
ttgtggtctggctatagtggttgactcttcatctatgatttcttcatcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatg |
12196960 |
T |
|
| Q |
201 |
ataacctgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatct |
257 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
12196961 |
ataacctccttctcagagacactgcacttatttgcagtacaatcccaatattcatct |
12197017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 33684295 - 33683978
Alignment:
| Q |
14 |
aaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtggtctggct |
113 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||| ||| ||||| || | || || |||| |||||| ||||||||| |||||||||| |
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| T |
33684295 |
aaaatgcaccaattcaccattagaacctacttcatcatcaccagatacttgacaatcctgcaatctcattgggatttgtttgtttctttatggtctggct |
33684196 |
T |
|
| Q |
114 |
atagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctgcttct |
213 |
Q |
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|
|||||||||| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| ||||||| |
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|
| T |
33684195 |
atagtggttggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataacttgcttct |
33684096 |
T |
|
| Q |
214 |
cagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggatcaagcaa |
313 |
Q |
| |
|
|||| |||||||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| ||||| ||| |
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|
| T |
33684095 |
cagacacactgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaatcaaacaa |
33683996 |
T |
|
| Q |
314 |
tctatatgctctagtatt |
331 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
33683995 |
tctatatgctccagtatt |
33683978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 14 - 331
Target Start/End: Complemental strand, 33701349 - 33701032
Alignment:
| Q |
14 |
aaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtggtctggct |
113 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |||||||||| ||| ||||| || | || || |||| |||||| ||||||||| |||||||||| |
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|
| T |
33701349 |
aaaatgcaccaattcaccattagaacctacttcatcatcaccagatacttgacaatcctgcaatctcattgggatttgtttgtttctttatggtctggct |
33701250 |
T |
|
| Q |
114 |
atagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctgcttct |
213 |
Q |
| |
|
|||||||||| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
33701249 |
atagtggttggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataacttgcttct |
33701150 |
T |
|
| Q |
214 |
cagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggatcaagcaa |
313 |
Q |
| |
|
|||| |||||||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| ||||| ||| |
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|
| T |
33701149 |
cagacacactgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaatcaaacaa |
33701050 |
T |
|
| Q |
314 |
tctatatgctctagtatt |
331 |
Q |
| |
|
||||||||||| |||||| |
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|
| T |
33701049 |
tctatatgctccagtatt |
33701032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6372763 - 6372849
Alignment:
| Q |
1 |
ctgctcgcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaa |
87 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||| || || ||||||| |
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| T |
6372763 |
ctgctagcattgcgaaatgcaccaattcaccatcactgcctacttcatcatcactagttacctaacaatcttccaatctccttggaa |
6372849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 14639644 - 14639327
Alignment:
| Q |
7 |
gcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtgg |
106 |
Q |
| |
|
|||||| ||||||||| || ||||||||| ||||| || ||||||| |||||| ||||| || | || || ||| | |||||| ||||||||||||| |
|
|
| T |
14639644 |
gcattgcaaaatgcactaactcaccatcagaacctatctcatcatcacaagttacttgacaatcctgcaatctccttagcatttgtttgtttctttgtgg |
14639545 |
T |
|
| Q |
107 |
tctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacc |
206 |
Q |
| |
|
|||||||||||| |||| ||| |||| | | | ||||| | || | |||||||| || ||||||||||| || | |||| |||||||||||| |
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|
| T |
14639544 |
tctggctatagttgttggctcctcatatgatacctcttcagaaataacttcttcatttgtgagaagctcatcagactccttcttattttcaatgataaca |
14639445 |
T |
|
| Q |
207 |
tgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggat |
306 |
Q |
| |
|
| || ||| | |||||||| | |||| | | |||||||| ||||| || ||||| |||||||||| ||| | || | ||| |||||||| ||| ||| |
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|
| T |
14639444 |
tttttttcatacacactgcattcatttgaattccaatcccagtattcttcctctaacactttcacatctctaattattgaaatcttcttagagtgtagat |
14639345 |
T |
|
| Q |
307 |
caagcaatctatatgctc |
324 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
14639344 |
caagcaatctataagctc |
14639327 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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