View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5300-Insertion-1 (Length: 1010)
Name: NF5300-Insertion-1
Description: NF5300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5300-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 427 - 973
Target Start/End: Original strand, 33526145 - 33526700
Alignment:
| Q |
427 |
gctaactgggaaattcaacattaaatttccaggtttagaatcttttatgatcactt-ggtttctctgttgtacagctttttggtttattttacataagta |
525 |
Q |
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| T |
33526145 |
gctaactgggaaattcaacattaaattcccaggtttagaatcttttatgatcattttggtttctctgttgtacagctttttggtttattttacataagta |
33526244 |
T |
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| Q |
526 |
ccttggaaagttttttacaggtataaatatgtactatatatgtacttgtatgaatttgtgtactctgttctctagattcataaattactgtatagttaaa |
625 |
Q |
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| T |
33526245 |
ccttggaaagttttttacaggtataaatatgtactatatatgtacttgtatgaatttgtgtactctgttctctagattcataaattactgtatagttaaa |
33526344 |
T |
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| Q |
626 |
ggaatgtgta-nnnnnnnncttccaaaatttgcataattgagaattgttttctgagttcttattagaaccgatgcaaaaagattgttcatgtatgtatat |
724 |
Q |
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| T |
33526345 |
ggaatgtgtatttttttttcttccaaaatttgcataattgagaattgttaactgagttcttattagaaccgatgcaaaaagattgttcatgtatgtatat |
33526444 |
T |
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| Q |
725 |
gtgtgtgtaatgctatttttcttgtctttaatttttctacagaagtttattcat------nnnnnnnnnnncaagctaaagaatgtttttggaattcttg |
818 |
Q |
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| T |
33526445 |
gtgtgtgtaatgctatttttcttgtctttaatttttctacagaagtttattcataaaaaaaaaaaaaaaaacaagctaaagaatgtttttggaattcttg |
33526544 |
T |
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| Q |
819 |
tggacacatttctgaaatggtccctgttcctgactggcatgtttggttctagagttcaatgac-agagagtagaatagatttaactcttggttcttttta |
917 |
Q |
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| T |
33526545 |
tggacacatttctgaaatggtccctgttcctgactggcatgtttggttctagagttcaatgacaagagagtagaatagatttaactcttggttcttttta |
33526644 |
T |
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| Q |
918 |
tggtttgatccagggacatactgacatacacacaattttgtttcaacagtgagcac |
973 |
Q |
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| T |
33526645 |
tggtttgatccagggacatactgacatacacacaattttgtttcaacagtgagcac |
33526700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 168 - 364
Target Start/End: Original strand, 33525886 - 33526082
Alignment:
| Q |
168 |
tcattgatggaggaagataataacaataacaaagagaatttggtagtgatgagatatcactctgattattatggtatttcaactgacattgctagagaga |
267 |
Q |
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| T |
33525886 |
tcattgatggaggaagataataacaataacaaagagaatttggtagtgatgagatatcactctgattattatggtatttcaactgatattgctagagaga |
33525985 |
T |
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| Q |
268 |
catggattgttggtggtttaacagatccaatgtcgaggagtcgaagttggaaaagatgaattaatctgatcattttccaatattaattactcttata |
364 |
Q |
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| T |
33525986 |
catggattgttggtggtttaacagatccaatgtcgaggagtcgaagttggaaaagatgaattaatctgatcattttccaatattaattactcttata |
33526082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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