View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5300_low_1 (Length: 450)
Name: NF5300_low_1
Description: NF5300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5300_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 42258125 - 42258538
Alignment:
| Q |
21 |
agcacagaagatgttaagagttgaggagtgattcttcaacaacgaattttttgttaacaaacttgttcctttttagttttctctttccttctctttagca |
120 |
Q |
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| T |
42258125 |
agcacagaagatgttaagagttgaggagtgattcttcaacaacgaattttttgttaacaaacttgttcctttttagttttctctttccttctctttagca |
42258224 |
T |
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| Q |
121 |
aaatgcttgtccctgctttacatatggctgtggggttgaaacaaaatttattaaaactaatttgtttgctaaaggcctaaagtcacataccttaaagtct |
220 |
Q |
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| T |
42258225 |
aa-tgcttgtccctactttacatatggctgtggggttgaaacaaaatttattaaaactaatttgtttgctaaaggcctaaagtcacataccttaaagtct |
42258323 |
T |
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| Q |
221 |
ttaaactgcttcaaataactgtttattgattctgatggtgcttataacagtttattgtaaagttaaagggaaattagcactgatttttatagtatag--- |
317 |
Q |
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| T |
42258324 |
ttaaactgcttcaaataactgtttattgattctgatggtgcttataacagtttattgtaaagttaaagggaaattagcactgatttttatagtatagtgt |
42258423 |
T |
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| Q |
318 |
-tatatatattattttgttaaagattatagtagcattaatttaaaggacaacatggtttgaaatgacaaaataacatcatagcagtaacagtttggtcaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42258424 |
atatatatattattttgttaaagattatagtagcattaatttaaaggacaacatggtttgaaatgacaaaataacatcatagcagtgacagtttggtcaa |
42258523 |
T |
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| Q |
417 |
tgaaattgttagctt |
431 |
Q |
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||||||||||||||| |
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| T |
42258524 |
tgaaattgttagctt |
42258538 |
T |
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