View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5300_low_2 (Length: 394)
Name: NF5300_low_2
Description: NF5300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5300_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 10519677 - 10520047
Alignment:
| Q |
18 |
aatcaacacaattagttgtatccattatgctcatctgcaagaaggtacaaattttaaagaaattaaataatataaaaaacattaactgaagaatatgggc |
117 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10519677 |
aatcaaaacaattagttgtgtccattatgctcatctgcaagaaggtacaaattttaaagaaattaaataatataaaaaacattaactgaagaatatgggc |
10519776 |
T |
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| Q |
118 |
atgtttggataaacagcttatagcacaaaaacgcttatgtataagcttacaaaagatatttttatagctaaacataaccttaaattgtttttataagcta |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10519777 |
atgtttggataaacagcttattgcacaaaaacgcttatgtataagcttacaaaagatatttttatagctaaacataaccttaaattgtttttataagcta |
10519876 |
T |
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| Q |
218 |
gttctcccaaacagactgaagagcttatagaagtagataagctcaaaaaagttaatcc-aaatcggtttactactgttactgctactaccatttcatcca |
316 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10519877 |
gttctcccaaacagactgaagagcttatagcagtagataagctcaaaaaagttaatccaaaatcggtttactactgttactgctactaccatttcatcca |
10519976 |
T |
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| Q |
317 |
tgaataatgcaatgcatgcaagaaagtgagaaaaatatgtgattatagattatgattattagtaccctatg |
387 |
Q |
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| T |
10519977 |
tgaataatgcaatgcatgcaagaaagtgagaaaaatatgtgattatagattatgattattagtaccttatg |
10520047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 2386289 - 2386321
Alignment:
| Q |
114 |
gggcatgtttggataaacagcttatagcacaaa |
146 |
Q |
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| T |
2386289 |
gggcatgtttggataaacagcttatagcacaaa |
2386321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 50681230 - 50681198
Alignment:
| Q |
152 |
ttatgtataagcttacaaaagatatttttatag |
184 |
Q |
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| T |
50681230 |
ttatgtataagcttacaaaagctatttttatag |
50681198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 32491446 - 32491511
Alignment:
| Q |
114 |
gggcatgtttggataaacagcttatagcacaaaaacgcttatgtataagcttacaaaagatattttta |
181 |
Q |
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| T |
32491446 |
gggcgtgtttagataaacagcttatagcac--aaccgcttatgtataagcttgcataagctattttta |
32491511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 8552875 - 8552832
Alignment:
| Q |
119 |
tgtttggataaacagcttatagcacaaaaacgcttatgtataagct |
164 |
Q |
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| T |
8552875 |
tgtttggataaacagcttatagcac--aaacgcttatatataagct |
8552832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Original strand, 14164050 - 14164084
Alignment:
| Q |
151 |
cttatgtataagcttacaaaagatatttttatagc |
185 |
Q |
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| T |
14164050 |
cttatgtataagcttacataagatatttttatagc |
14164084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 1058218 - 1058173
Alignment:
| Q |
149 |
cgcttatgtataagcttacaaaagatatttttatagctaaacataa |
194 |
Q |
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| T |
1058218 |
cgcttatgtataagcttacataagctatttttatagcaaatcataa |
1058173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 420258 - 420331
Alignment:
| Q |
119 |
tgtttggataaacagcttatagcacaaaaacgcttatgtataagcttacaaaagatatttttatagctaaacataa |
194 |
Q |
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||||||||||||||||||||| ||||| || |||||||||||||| || ||| ||| |||||||| ||| |||| |
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| T |
420258 |
tgtttggataaacagcttata--tcaaaagcgtttatgtataagcttgcataagctatgtttatagcaaaagataa |
420331 |
T |
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