View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301-Insertion-10 (Length: 728)
Name: NF5301-Insertion-10
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-10 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 670; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 27 - 728
Target Start/End: Complemental strand, 16413939 - 16413238
Alignment:
| Q |
27 |
tatgttctgtgtttattatgcgtgttttttgccgggaaacgataaacagtatgcagcccttttgcgaaaaacgacaattggatttcaacagtattatgtt |
126 |
Q |
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| T |
16413939 |
tatgttctgtgtttattatgcgtgttttttgccgggaaacgataaacagtatgcaacccttttgcgaaaaacgacaattggatttcaacagtattatgtt |
16413840 |
T |
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| Q |
127 |
cttattttaattgaatttgtttcttttaaatttaaaccgttgtcgccatgttttcatgcaaattcatactgcaaagcttccgtaagcattagcgaatctc |
226 |
Q |
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| T |
16413839 |
cttattttaattgaatttgtttcttttaaatttaaaccgttgtcgccatgttttcatgcaaattcatactgcaaagcttccgtaagcattagtgaatctc |
16413740 |
T |
|
| Q |
227 |
ttttgtcgggtctgaaaacagatcatttcgtaagtttacgagaattaatgtctgaaatatgaagcttagttttcatctcatcattacataatatgatatc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16413739 |
ttttgtcgggtctgaaaacagatcatttcgtaagtttacgagaattaatgtctgaaatatgaagcttagttttcatctcatcattatataatatgatatc |
16413640 |
T |
|
| Q |
327 |
tttgatgtaagtagctaaaatatcaaatcaaacatttgagagacttggcaaacttcagtgttgtcaatcatggatcgcagaaaatagcagtttattcaaa |
426 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16413639 |
ttcgatgtaagtagctaaaatatcaaatcaaacatttgagagacttggcaaacttcagtgttgtcaatcatggatcgcagaaaatagcagtttattcaaa |
16413540 |
T |
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| Q |
427 |
ttgtgctatgccacattgttatagccactatttcgtagcactttgtactaaatccatatcgtagaatcatagcggtttgttaaaattccgctacactata |
526 |
Q |
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| T |
16413539 |
ttgtgctatgccacattgttatagccactatttcgtagcactttgtactaaatccatatcgtagaatcatagcggtttgttaaaattccgctacactata |
16413440 |
T |
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| Q |
527 |
gcgctgctattgcaaacttaagcctttcttctactttcctataaaatggataggttgatgaatctaattttctaaaacaccctttcctcattacatacta |
626 |
Q |
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| T |
16413439 |
gcgctgctattgcaaacttaagcctttcttctactttcctataaaatggataggtcgatgaatctaattttctaaaacaccctttcctcattacatacta |
16413340 |
T |
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| Q |
627 |
taggaaatctcagaaggttacaagtacatgacgagctttcgagtaactcactgtgtgcttattctagaagataaaattctaacgagtattccttttctgt |
726 |
Q |
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| T |
16413339 |
taggaaatctcagaaggttacaagtacacgaggagctttcgagtaactcactgtgtgcttattctggaagataaaattctaacgagtattccttttctgt |
16413240 |
T |
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| Q |
727 |
aa |
728 |
Q |
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|| |
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| T |
16413239 |
aa |
16413238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 33724978 - 33725031
Alignment:
| Q |
384 |
gtgttgtcaatcatggatcgcagaaaatagcagtttattcaaattgtgctatgc |
437 |
Q |
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| T |
33724978 |
gtgttgttaatcaaggatcgcagataatagtggtttattcaaattctgctatgc |
33725031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 46982911 - 46982860
Alignment:
| Q |
386 |
gttgtcaatcatggatcgcagaaaatagcagtttattcaaattgtgctatgc |
437 |
Q |
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| T |
46982911 |
gttgtcaatcaaggatcgcggaaaatagcagtttgttcaaattttgctatgc |
46982860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 15255141 - 15255204
Alignment:
| Q |
387 |
ttgtcaatcatggatcgcagaaaatagcagtttattcaaattgtgctatgccacattgttatag |
450 |
Q |
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| T |
15255141 |
ttgtcaattatggatcgcagaaaatagtggtttgtttaaattctgctatgcaacattgctatag |
15255204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 38596854 - 38596805
Alignment:
| Q |
385 |
tgttgtcaatcatggatcgcagaaaatagcagtttattcaaattgtgcta |
434 |
Q |
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| T |
38596854 |
tgttgtcaatcatggaccgcaaaaaatagcagtttgttcaaattctgcta |
38596805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 7876982 - 7876934
Alignment:
| Q |
380 |
ttcagtgttgtcaatcatggatcgcagaaaatagcagtttattcaaatt |
428 |
Q |
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| T |
7876982 |
ttcagtgttgacaatcgtggatcgcaggaaatagcagtttcttcaaatt |
7876934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 39544284 - 39544240
Alignment:
| Q |
382 |
cagtgttgtcaatcatggatcgcagaaaatagcagtttattcaaa |
426 |
Q |
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| T |
39544284 |
cagtgttgtcaatcatggaacgcggaaaatagcagtttgttcaaa |
39544240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 537
Target Start/End: Original strand, 3771617 - 3771659
Alignment:
| Q |
495 |
atagcggtttgttaaaattccgctacactatagcgctgctatt |
537 |
Q |
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| T |
3771617 |
atagcggtttgttaaaattcctctacactatagagctactatt |
3771659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 529
Target Start/End: Original strand, 55469972 - 55470006
Alignment:
| Q |
495 |
atagcggtttgttaaaattccgctacactatagcg |
529 |
Q |
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| T |
55469972 |
atagcggtttgtttaaattccgctacactatagcg |
55470006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 406 - 519
Target Start/End: Original strand, 34925273 - 34925384
Alignment:
| Q |
406 |
gaaaatagcagtttattcaaattgtgctatgccacattgttatagccactatttcgtagcactttgtactaaatccatatcgtagaatcatagcggtttg |
505 |
Q |
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| T |
34925273 |
gaaaatagcagtttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtactaaa--cgtaccgcagaaaaatagcggtttg |
34925370 |
T |
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| Q |
506 |
ttaaaattccgcta |
519 |
Q |
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| T |
34925371 |
ttataattcagcta |
34925384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 468 - 536
Target Start/End: Complemental strand, 11257774 - 11257705
Alignment:
| Q |
468 |
tttgtactaaatc-catatcgtagaatcatagcggtttgttaaaattccgctacactatagcgctgctat |
536 |
Q |
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| T |
11257774 |
tttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctacactatagcactgctat |
11257705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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