View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5301-Insertion-11 (Length: 716)
Name: NF5301-Insertion-11
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-11 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 256 - 716
Target Start/End: Original strand, 19963559 - 19964010
Alignment:
| Q |
256 |
cagcatacaaattctgacatgtgataaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagagatttcaaaacaggagaaatgggaa |
355 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
19963559 |
cagcatacaacttctgacatgtgacaaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagatatttcaaaacaggagaaataggaa |
19963658 |
T |
|
| Q |
356 |
tgtgatgcttttggcagtgtccaatttagtatcatttacagtcattcacnnnnnnnnagttctacaagtcattcactttgatgaatgctactttgcatat |
455 |
Q |
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|||||||| |||||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||||| | |
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| T |
19963659 |
tgtgatgc-tttggcagtgcccaatttagtatcatttatagtcattcac-ttttgttagtactacaagtcattcacttcgatgaatgctactttgcattt |
19963756 |
T |
|
| Q |
456 |
taactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaattcaagatatggaatagataatagctctcattaatcatta |
555 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
19963757 |
taactgtttgacaaaaggatcattagaacttagtcgaggtcttctctttgcatttcttaaatcaagatatggaatagataatagctc-------tcatta |
19963849 |
T |
|
| Q |
556 |
tgcctgaaatttaaaacttannnnnnnnnctccatcaatttttgaatttaacaatgacgatgtaccattgcagggttccttggcaaaataaaggccttat |
655 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
19963850 |
tgcctgaaatttaaaacttattgttttttctcctccaatttttgaatttaacaatgacggtgtaccattgcagagttccttggcaaaataaaggccttat |
19963949 |
T |
|
| Q |
656 |
ttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttataaatttttca |
716 |
Q |
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| T |
19963950 |
ttgaagattttcttttgtccttttatttgtggactcgccgggtaagtttataaatttttca |
19964010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 5e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 439 - 713
Target Start/End: Complemental strand, 1661542 - 1661275
Alignment:
| Q |
439 |
aatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaattcaagatatggaatagataata |
538 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
1661542 |
aatgctactttgcattctaactgtttgataaaaggatcattaaaacttagttgaggtcttctcagtgcatttcttaaatcaagacatggaatagataata |
1661443 |
T |
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| Q |
539 |
gctctcattaatcattatgcctgaaatttaaaacttannnnnnnnnctccatcaatttttgaatttaacaatgacgatgtaccattgcagggttccttgg |
638 |
Q |
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|||| ||||||||||| ||||||||||||| |||| | |||||||||||||||||| | | ||||||||| |||| |||||||| |
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| T |
1661442 |
gctc-------ccattatgcctgtaatttaaaacttattgttttttctcctcccatttttgaatttaacaattatggtgtaccattacaggcttccttgg |
1661350 |
T |
|
| Q |
639 |
caaaataaaggccttatttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttataaatttt |
713 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||| | || |||||||| |||||||| |
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| T |
1661349 |
caaaataaaggccttatttgaaggttttcttttgtgcttttatttgtggactggtcgagtaagtttttaaatttt |
1661275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 416 - 713
Target Start/End: Complemental strand, 19910357 - 19910065
Alignment:
| Q |
416 |
tctacaagtcattcactttgatgaatgctacttt--gcatat-taactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttct |
512 |
Q |
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|||||||||||||||||||||||||||||| ||| |||| | ||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
19910357 |
tctacaagtcattcactttgatgaatgctattttttgcatttataattgtatgataaaaggatcacgagaacttagttgaggtcttctctatgcatttct |
19910258 |
T |
|
| Q |
513 |
taattcaagatatggaatagataatagctctcattaatcattatgcctgaaatttaaaacttannnnnnnnnctccatcaatttttgaatttaacaatga |
612 |
Q |
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||| |||||| |||||||||||||||| |||||||| | ||||| |||||||||||| || | |||||||||||||| | ||||| |
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| T |
19910257 |
taaatcaagacatggaatagataataggtctcatta-------tacctgagatttaaaacttattgttttttcttctccaatttttgaatttgagaatga |
19910165 |
T |
|
| Q |
613 |
cgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttataaattt |
712 |
Q |
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|||| ||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19910164 |
agatgaaccattgaaggatttcttggcaaaataaaggccttatttaaaggtttt-ttttgtccttttatttgtggactggccgggtaagtttataaattt |
19910066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 404
Target Start/End: Complemental strand, 19910487 - 19910342
Alignment:
| Q |
259 |
catacaaattctgacatgtgataaaatgtatgaagtacggttcaaacctgttgtgaaggcagccattagagagatttcaaaacaggagaaatgggaatgt |
358 |
Q |
| |
|
||||||||| || ||| ||| ||| |||||||||||| | ||||||||| |||| |||||||||||||||||||||||| |||||||||| |||| |
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| T |
19910487 |
catacaaatcctaacaaatgacaaagtgtatgaagtacaggccaaacctgtgtggaagacagccattagagagatttcaaaacgggagaaatggaaatgc |
19910388 |
T |
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| Q |
359 |
gatgcttttggcagtgtccaatttagtatcatttac-agtcattcac |
404 |
Q |
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||| ||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
19910387 |
aatg-ttttggcagtgtccaatttagtatcatctacaagtcattcac |
19910342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 495
Target Start/End: Original strand, 55877785 - 55877858
Alignment:
| Q |
422 |
agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggt |
495 |
Q |
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|||||||| ||||||| || |||||||||||| ||| ||| ||||||||||||| | ||| ||||||||||| |
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| T |
55877785 |
agtcattctctttgatcaaagctactttgcattctaagtgtatgataaaaggatcgcttgaatttagttgaggt |
55877858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 607 - 716
Target Start/End: Complemental strand, 7881563 - 7881454
Alignment:
| Q |
607 |
caatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggttttcttttgtccttttatttgtggactagccgggtaagtttat |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| | ||| |||| ||||| |
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| T |
7881563 |
caatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttgaaggttttcttttgtcctcttattcgtggattggccaggtacatttat |
7881464 |
T |
|
| Q |
707 |
aaatttttca |
716 |
Q |
| |
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|||||||||| |
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| T |
7881463 |
aaatttttca |
7881454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 418 - 548
Target Start/End: Original strand, 25490145 - 25490274
Alignment:
| Q |
418 |
tacaagtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgaggtcttctctttgcatttcttaatt |
517 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||| |||| || |||| | |
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| T |
25490145 |
tacaagtcattcactttgatgaaagctactttgcattataaccgtttgataaaaggatcactagaactaagttgaggtcttctctatgcaatt-ttaaat |
25490243 |
T |
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| Q |
518 |
caagatatggaatagataatagctctcatta |
548 |
Q |
| |
|
||||| ||| ||||| |||| |||||||||| |
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|
| T |
25490244 |
caagacatgaaataggtaatggctctcatta |
25490274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 592 - 666
Target Start/End: Original strand, 25490311 - 25490385
Alignment:
| Q |
592 |
aatttttgaatttaacaatgacgatgtaccattgcagggttccttggcaaaataaaggccttatttaaaggtttt |
666 |
Q |
| |
|
||||||| ||||| ||||||| ||||||||||| ||||||||||| |||||||||| ||||||| ||| |||| |
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|
| T |
25490311 |
aatttttaaatttgacaatgaggatgtaccattagcgggttccttggaaaaataaaggtcttatttgaagttttt |
25490385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 1972400 - 1972441
Alignment:
| Q |
8 |
ctttcatatgtaagcctcttggtggttagtagaggaatattg |
49 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1972400 |
ctttcatatgtaagcctcttggtggttagtagaggaatattg |
1972441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 422 - 494
Target Start/End: Complemental strand, 13426 - 13354
Alignment:
| Q |
422 |
agtcattcactttgatgaatgctactttgcatattaactgtttgataaaaggatcattagaacttagttgagg |
494 |
Q |
| |
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|||| ||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||| ||||||| |
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| T |
13426 |
agtcgttcactttgatgagtgctactttgccgtctaactgtttgataaaatgatctctagaacttggttgagg |
13354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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