View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5301-Insertion-13 (Length: 661)
Name: NF5301-Insertion-13
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 2939132 - 2939418
Alignment:
| Q |
8 |
gatttacccaaacaaacccttagatcttaaccctaaaaataaaaataacgttccaataaataagacatcaaaatgatttgaggtagacctagatcgacct |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939132 |
gatttacccaaacaaacccttaaatcttaaccctaaaaataaaaataacgttccaataaataagacatcaaaatgatttgaggtagacctagatcgacct |
2939231 |
T |
|
| Q |
108 |
tttcatgcatcatgttcattaaaagacatacaatatcaaaggcgatatgaaaacttcaagagatcgaaataaaactccttcaatggctatagcctatata |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2939232 |
tttcatgcatcatgttcgttaaaagacatacaatatcaaaggcgatatgaaaacttcaagagatcgaaatagaactccttcaatggctatagcctatata |
2939331 |
T |
|
| Q |
208 |
taattgcatgcaacgtttgaatatacttaggatcaacaaaacctagacaaatttgagtatgctattctaatgttacatatacgattc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2939332 |
taattgcatgcaacgtttgaatatacttaggatcaacaaaacctagacaaatttgagaatgctattctaatgttacatatacgattc |
2939418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 360 - 586
Target Start/End: Original strand, 2939484 - 2939711
Alignment:
| Q |
360 |
ggtactaaccctaatgatcgtgacaaaaccttgagtgttgatcgatgaatggatccaatatcggcggttctgtaattcagtccctctaatgctgctgttt |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939484 |
ggtactaaccctaatgatcgtgacaaaaccttgagtgttgatcgatgaatggatccaatatcggcggttctgtaattcagtccctctaatgctgctgttt |
2939583 |
T |
|
| Q |
460 |
tttgtgatttgttgccatttaataatcgatgcctcaaaaatgagttatgtatggaagttagttttaatttgaggcacaatttaaggaagttactactgtc |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2939584 |
tttgtgatttgttgccatttaataatcgatgcctcaaaaatgagttatgtatggaagttagttttaatttgaggcacaatttaaggaagttactactgtc |
2939683 |
T |
|
| Q |
560 |
a-tttttcttggttaaattcaagcggtg |
586 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
2939684 |
attttttcttggttaaattcaagcggtg |
2939711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University