View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301-Insertion-15 (Length: 481)
Name: NF5301-Insertion-15
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-15 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Original strand, 35380591 - 35381077
Alignment:
| Q |
7 |
actaacagactcaccaaaaaatatatattagtcccctctccctctctctcacagtaacaaaaattacatcgcacgtaatgcgatcctttccctattctcc |
106 |
Q |
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| T |
35380591 |
actaacagactcaccaaaaaatatatattagtcccctctccctctctctctcagtaacaaaaattacatcgcacgtaatgcgatcctttccctattctcc |
35380690 |
T |
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| Q |
107 |
ccctcccatgacgaccatagctccaactcagccgcacatggaacagtatcaccatcacgcctcatctccttcattaattatgaatccttttannnnnnnn |
206 |
Q |
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| T |
35380691 |
ccctcccatgacgaccatagctccaactcagccgcacatggaacagtatcaccatcacgcctcatctccttcattaattatgaatccttttatttttttt |
35380790 |
T |
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| Q |
207 |
cccatgctcttcgtaggggtggttctg------------atgaaaatcctcttcttaagcatcaaatattggtgtacaactcgccatggaacaatggtgg |
294 |
Q |
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| T |
35380791 |
cccatgctcttcgtaggggtggttctggtgaagatcctgatgaaaatcctcttcttaagcatcaaatattggtgtacaactcgccatggaacaatggtgg |
35380890 |
T |
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| Q |
295 |
aggccaggcgcacgcatgtcattcacaacttagccgagtccgttataaacaccgccgtcatcttctcctccgtctacaacgctaaatatgcacaagaaga |
394 |
Q |
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| T |
35380891 |
aggccaggcgcacgcacgtcattcacaacttagacgagtccgttataaacaccgccgtcatcctctcctccgtctacaacgctaaatatgcacaagaaga |
35380990 |
T |
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| Q |
395 |
atttcaacgtgattgtgttatttgtttgaatgaatttgaaggcaatgataccattggaacgctccctctttgttcccacagtttcca |
481 |
Q |
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| T |
35380991 |
atttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattggaacgctccctctttgttcccagagtttcca |
35381077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 35374409 - 35374494
Alignment:
| Q |
82 |
taatgcgatcctttccctattctcc---ccctcccatgacgaccatagctccaactcagccgcacatggaacagtatcaccatcac |
164 |
Q |
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| T |
35374409 |
taatgcgatcctttccctattcttcttcccctcccatgacaaccacagctccaactcagccgcacatgcatcactatcaccatcac |
35374494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 481
Target Start/End: Original strand, 35374708 - 35374823
Alignment:
| Q |
366 |
gtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgtttgaatgaatttgaaggcaatgataccattggaacgctccctcttt |
465 |
Q |
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| T |
35374708 |
gtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacactccctcttt |
35374807 |
T |
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| Q |
466 |
gttcccacagtttcca |
481 |
Q |
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| T |
35374808 |
gttcccacagcttcca |
35374823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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