View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301-Insertion-19 (Length: 232)
Name: NF5301-Insertion-19
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 45524799 - 45524574
Alignment:
| Q |
7 |
aataatatgaatggaaatttcatagcatatataagaaaaggactagacttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagct |
106 |
Q |
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| T |
45524799 |
aataatatgaatggaaatttcatagcatatataagaaaaggactagacttacgggacaacagcagcatcagaaattttgggatgagacagaagaagagct |
45524700 |
T |
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| Q |
107 |
tcaagttcagctggagcaacttgaaatcctttgtatttgattaattccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatat |
206 |
Q |
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| T |
45524699 |
tcaagttcagctggagcaacttgaaatcctttgtatttgattaattccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatat |
45524600 |
T |
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| Q |
207 |
cacctgtatacaaccaaccttctttg |
232 |
Q |
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| T |
45524599 |
cacctgtatacaaccaaccttctttg |
45524574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 352246 - 352071
Alignment:
| Q |
53 |
acttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaacttgaaatcctttgtatttgattaatt |
152 |
Q |
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| T |
352246 |
acttacgggacgacagcgacatcggaaatttgaggatgtgagagaataatggcttcaagttcagctggagcaacttgaaaacctttgtatttaatcaatt |
352147 |
T |
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| Q |
153 |
ccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaaccttc |
228 |
Q |
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| T |
352146 |
ctttaagtctatcaactatgaacaactcatcatcatcgtcaatgaatccaatgtcaccagtatgcaaccaaccttc |
352071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 53458577 - 53458456
Alignment:
| Q |
53 |
acttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaacttgaaatcctttgtatttgattaatt |
152 |
Q |
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| T |
53458577 |
acttacggtacgacagcagcatcagaaatgtttggatgagcaatcaacaatgcttcgagctcagcaggagctacttggtatcctttgtatttaatcaatt |
53458478 |
T |
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| Q |
153 |
ccttcaatctatcaacaatgaa |
174 |
Q |
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| T |
53458477 |
cctttaatcgatcaacaatgaa |
53458456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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