View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301-Insertion-2 (Length: 1064)
Name: NF5301-Insertion-2
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 353 - 924
Target Start/End: Original strand, 43531024 - 43531594
Alignment:
| Q |
353 |
acttccacttttattcaagtcctttgtagtgtgtatagtatctggtacaatgattatgtggttttagtcaacaagtactattagatacactgaccatgtt |
452 |
Q |
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| T |
43531024 |
acttccacttttattcaagtcctttgcagtgtgtatagtatctggtacaatgattatgtggttttagtcaacaagtactattagatacactgaccatgtt |
43531123 |
T |
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| Q |
453 |
gggaatttggtactgtatctgatatgtgatttagttgctttccattattgttcattaatcattatccttcgttggatgaatgatatgcattttgcatatt |
552 |
Q |
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| T |
43531124 |
gggaatttggtactgtatctgatatgtgatttagttgctttccattattgttcattaatcattatccttcgttggatgaatgatatgcattttgcatatt |
43531223 |
T |
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| Q |
553 |
tggaagcagtttaaaatagtagaatacataaatgatctttaatattatcctttttgcctggatgactgttttctatagtgaatatttgttacttctttta |
652 |
Q |
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| T |
43531224 |
tggaagcagtttaaaa---tagaatacatgaatgatctttaatattatcctttttgtctggatgactgttttctatagtgaagatttgttacttctttta |
43531320 |
T |
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| Q |
653 |
a--accacattcaaggataaaaggaggaggattttgattacattcatatgtgaactacattatttgaaaaatgttgctctgatgagtgatgactacatgt |
750 |
Q |
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| T |
43531321 |
aacaccacattcaaggataaaaggaggtggattttgattacattcatatgtgaactacattatttgaaaaatgttgctctgatgagtgatggctacatgt |
43531420 |
T |
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| Q |
751 |
-aattatatatgattctacacgtgacgtgagaactcagatagcttattgaaaacttgggagtgaaggcaaaggtgtactaaatcactaaacaacaacaga |
849 |
Q |
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| T |
43531421 |
aaattatatatgattctacacgtgacgtgagaactcagatagcttattgaaaacttgggagtgaaggcaaaggtgtactaaatcactgaacaacaacaga |
43531520 |
T |
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| Q |
850 |
gttg-tattggtatttaggccaaatttagaccactaaagttgtgaagttgaaagaagtgaaaagtgagccatggtt |
924 |
Q |
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| T |
43531521 |
gttgttattggtatttaggccaaatttagactactaaag-tgtgaagttgagag-agtgaaaagtgaagcatggtt |
43531594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 43530672 - 43530943
Alignment:
| Q |
8 |
agtaggattaagggtgagtatgatgtgggtgatatggagatggtgttgaagcttgggttggcttgttgtcatcctgagccgaataggaggcctactatga |
107 |
Q |
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| T |
43530672 |
agtaggattaagggtgagtatgatgtgggtgatatggagatggtgttgaagcttgggttggcttgttgtcatcctgagccgaataggaggcctactatga |
43530771 |
T |
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| Q |
108 |
aggaagttgtcgcgcttcttcttggggaggatattgcggaggcgccggggaaagtgttgtctgatttggctcgtggtgatgacaatggtggcggcggcgg |
207 |
Q |
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| T |
43530772 |
aggaagttgtcgcgcttcttcttggggaggatattgcggaggcgccggggaaagtgttgtctgatttggctcgtggtgatgacaatggtggcggcggcgg |
43530871 |
T |
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| Q |
208 |
cagggaatctgatgaggaggtgcctttgcaatccac-------ctagtgacttcactgcatatagttgatat |
272 |
Q |
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| T |
43530872 |
cagggaatccgatgaggaggtgcctttgcaatccacctagtgactagtgacttcactgcatatagttgatat |
43530943 |
T |
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