View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301-Insertion-22 (Length: 134)
Name: NF5301-Insertion-22
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-22 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 3e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 3e-61
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 34173207 - 34173082
Alignment:
| Q |
8 |
cttatttcatcaaattttaaagaacacaattcacctccctccatcgtttatgtttgaagtcacttattcaacatgaataagtttttgtcactcatagagt |
107 |
Q |
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| T |
34173207 |
cttatttcatcaaattttaaagaacacaattcacctccctccatcgtttatgtttgaagtcacttattcaacatgaataagtttttgtcactc-tagagt |
34173109 |
T |
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| Q |
108 |
ttacttacgtcgatagttttcacccta |
134 |
Q |
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| T |
34173108 |
ttacttacgtcgatagttttcacccta |
34173082 |
T |
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