View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301-Insertion-3 (Length: 996)
Name: NF5301-Insertion-3
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 860; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 860; E-Value: 0
Query Start/End: Original strand, 7 - 993
Target Start/End: Original strand, 42212830 - 42213835
Alignment:
| Q |
7 |
aatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccctagctgtgctatcttaatccaacttatcctatact |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212830 |
aatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccctagctgtgctatcttaatccaacttatcctatact |
42212929 |
T |
|
| Q |
107 |
ttacagtttgttccacannnnnnnnn-aattattattgttcaattatgaagatatcatcctgttctacaatttgacttcctcatcggtcatcatggactt |
205 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42212930 |
ttacagtttgttccacattttttttttaattattattgttcaattatgaagatatcatcctgttctacaatttgacttcctcatcggtcatcatggactt |
42213029 |
T |
|
| Q |
206 |
agctgagttttattttcccttgttaacattttgggtccaatagtatattttgttctttgttaaagtttatttatacttatatgagtgataatattaatat |
305 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213030 |
agctgagttttattttcccttgttaacattttgggtccaatagtatattttgttctttgttaaagtttatttatacttatatgagtgataatattaatat |
42213129 |
T |
|
| Q |
306 |
gtttcttatttttcattaattattgttctgctcctccaagatggtagctagtaaatgtcttgtcttgagagattttc-----------tttaatttattg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42213130 |
gtttcttatttttcattaattattgttctgctcctccaagatggtagctagtaaatgtcttgtcttgagagattttcatttgtttttctttaatttattg |
42213229 |
T |
|
| Q |
395 |
tatcaaattggtagttatgcttatgattctttggttaaaccaatataacagtgtgttgctgatccttatttaggatgatagctactggaatgagtttaac |
494 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213230 |
tatcaaattggtagttatgcttatgattctttggttaaaccaatataacagtgtgttgctgatccttatttaggatgatagctactggaatgagtttaac |
42213329 |
T |
|
| Q |
495 |
aggaagtgaaattggcagcatgacagaagagcaaaaacaaactgctcacctttgtaatatgagaaagcaagtagcttttatttgcactcaagtatcatca |
594 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42213330 |
aggaagtgaaactggcagcatgacagaagagcaaaaacaaactgctcacctttgtaatatgagaaagcaagtagcttttatttgcactcaagtatcatca |
42213429 |
T |
|
| Q |
595 |
tcaaagagaaacactgatcttcgtgaatgccgt---------ggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcg |
685 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213430 |
tcaaagagaaacactgatcttcgtgaatgccgtggtgaccgtggtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattca |
42213529 |
T |
|
| Q |
686 |
attctggtgcgaacatctggttggctttctggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagt |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42213530 |
attctggtgcgaacatctggttggctttctggttgtgtttagtaacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagt |
42213629 |
T |
|
| Q |
786 |
taaacctgaagagaatgcttctttagctaacagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctac |
885 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42213630 |
taaacctgaagagaatgcttctttagctaacagaagcattccaaatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctac |
42213729 |
T |
|
| Q |
886 |
tctgacggcttagggtct-cccacagtacttgttcatccacctattacgacgctttcctctgagatttcagatttttgacggaacaagttactggcactt |
984 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| | |
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| T |
42213730 |
tctgacggcttagggtctccccacagtacttgttcatccacctattacgacgcttt-ctctgagatttcaga-ttttgacggaacaagttacgggcac-t |
42213826 |
T |
|
| Q |
985 |
ctttgctaa |
993 |
Q |
| |
|
||||||||| |
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|
| T |
42213827 |
ctttgctaa |
42213835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 629 - 993
Target Start/End: Original strand, 42206640 - 42207002
Alignment:
| Q |
629 |
gtaacagaagaaagtcttcgccgtttgttgaagagaatgactattctgcttcattcgattctggtgcgaacatctggttggctttctggttgtgtttagt |
728 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||||| |||||||||||||||||| ||| | ||| |||| ||||||| |||| |||||||||||||| |
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| T |
42206640 |
gtaacaaaagaaggtcttcgtcgtttgttgaagagaacgactattctgcttcattccatttggatgctaacagctggttgcctttttggttgtgtttagt |
42206739 |
T |
|
| Q |
729 |
aacaagctcctactttctgttgagcaaaaaagtcaactttttcagtggctgcagagttaaacctgaagagaatgcttctttagctaacagaagcattcca |
828 |
Q |
| |
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||||||||||||||||||||||| | || |||| |||||||| || ||||||| ||| ||||||||||| ||||||| ||||| |||||||||| |
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|
| T |
42206740 |
gacaagctcctactttctgttgagggacaatatcaattttttcagcagcagcagagtaaaatatgaagagaatgtttctttacataacaaaagcattcca |
42206839 |
T |
|
| Q |
829 |
aatgaaagaacagataatatcaatgatgcaacttctgtagatgatgcacttagctactctgacggcttagggtct-cccacagtacttgttcatccacct |
927 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||| |
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|
| T |
42206840 |
aatgaaagaagagataatatcaatgatgcaactgctgtagatgatgcacttagctactctgagggctcagggtctccccatagtacttgttcatccacct |
42206939 |
T |
|
| Q |
928 |
attacgacgctttcctctgagatttcagatttttgacggaacaagttactggcacttctttgctaa |
993 |
Q |
| |
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|||| |||| ||| ||| ||||||||||| |||||| |||| |||||| ||||| |||||||||| |
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|
| T |
42206940 |
attatgacg-ttttctccgagatttcaga-ttttgatagaactagttaccggcac-tctttgctaa |
42207002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 415 - 567
Target Start/End: Original strand, 42206437 - 42206590
Alignment:
| Q |
415 |
ttatgattctttggttaaaccaatataacagtgtgttgctgatccttattta-ggatgatagctactggaatgagtttaacaggaagtgaaattggcagc |
513 |
Q |
| |
|
||||| |||||||||||||| ||| |||||||||| |||||| | | ||| ||||||||| ||||| |||||||||| ||||||||| | |||| || |
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|
| T |
42206437 |
ttatgtttctttggttaaacaaatgcaacagtgtgtgactgatcttaaattaaggatgatagatactgcaatgagtttagcaggaagtggagctggctgc |
42206536 |
T |
|
| Q |
514 |
atgacagaagagcaaaaacaaactgctcacctttgtaatatgagaaagcaagta |
567 |
Q |
| |
|
|||||| || | || ||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
42206537 |
atgacaaaaaaacagaaacatattgctcacctttgtaatctgagaaagcaagta |
42206590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 42205639 - 42205753
Alignment:
| Q |
7 |
aatttgcttgtttgatgaacatttcacagatttatttgcacttttagattgattaatttttcccct--agctgtgctatcttaatccaacttatcctata |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | | | || |||||||||||||| ||||||||| |
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| T |
42205639 |
aatttgcttgtttgatgaacatttcacagatttatttgcactttt-gattgattattttttctagttgtgatatgatatcttaatccaacctatcctata |
42205737 |
T |
|
| Q |
105 |
ctttacagtttgttcc |
120 |
Q |
| |
|
||| |||||| ||||| |
|
|
| T |
42205738 |
cttcacagttagttcc |
42205753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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