View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5301-Insertion-5 (Length: 973)
Name: NF5301-Insertion-5
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 873; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 873; E-Value: 0
Query Start/End: Original strand, 8 - 966
Target Start/End: Original strand, 3878775 - 3879746
Alignment:
| Q |
8 |
tgactgacacctccgatgataaaataaaaagtgatggtttattcatttttcaggtgcccacaacttaaa--------------gagcagtaacatggcac |
93 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3878775 |
tgactgacacctccgatgataaaataaaaagtgatggtttattcatttttcaggtgcccacaacttaaaactatgtctttgaagagcagtaacatggcac |
3878874 |
T |
|
| Q |
94 |
atgttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctca |
193 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3878875 |
aggttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgttgcaacttcatgccctca |
3878974 |
T |
|
| Q |
194 |
actggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattcatca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3878975 |
actggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattcatca |
3879074 |
T |
|
| Q |
294 |
tactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagtatatggcttttctct |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879075 |
tactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagtatatggcttttctct |
3879174 |
T |
|
| Q |
394 |
tttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagctcatagctctatgt |
493 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879175 |
tttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagctcatagctctatgt |
3879274 |
T |
|
| Q |
494 |
tggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcaccccgccaatgcaggtttt |
593 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
3879275 |
tggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacatttaaccaccccgccaatgcaggtttt |
3879374 |
T |
|
| Q |
594 |
gtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttca |
693 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3879375 |
gtaactccgcagttgcagtctattgacttgagcgtcgttggatcttccacatttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttca |
3879474 |
T |
|
| Q |
694 |
ttttctctctccccagaaaagcactataattctattattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttct |
793 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3879475 |
ttttctctctccccagaaaagcactataattctattattgatccgtctctctctattgcttttcactttctgtttaagtcaataccaaatccttttttct |
3879574 |
T |
|
| Q |
794 |
attgttgcgcctaatttannnnnnngaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtggtctgact |
893 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3879575 |
attgttgcgcctaatttatttttttgaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagt-gtctgact |
3879673 |
T |
|
| Q |
894 |
gctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgtgttatacacttatacttatgtct |
966 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3879674 |
gctctgtacttcaccggatcaatatcacttcaaattcacttcaagtatgtgttatacacttatacttatgtct |
3879746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 31 - 714
Target Start/End: Original strand, 3864801 - 3865513
Alignment:
| Q |
31 |
ataaaaagtgatggtttattcatttttcaggtgcccacaacttaaa--------------gagcagtaacatggcacatgttgtacttgattgccctctt |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| ||||| ||| ||||||||||| |
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|
| T |
3864801 |
ataaaaagtgatggtttattcttttttcaggtgcccgcaacttaaaaccatgtcattgaagcgcagtaacatggcacaagttgtgcttaattgccctctt |
3864900 |
T |
|
| Q |
117 |
ctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctcaactggtgaagctggacatgcgta |
216 |
Q |
| |
|
|| | |||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
3864901 |
ctgcttgaacttgatatgggttcttgccacaaacttcctgatgctgctattcgtgctgctgcaacttcatgccctcaactagtgaaactggacatgcgta |
3865000 |
T |
|
| Q |
217 |
actgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggttttcttgattcatcatactgcccaagcatatctttgga |
316 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
3865001 |
attgttcttgtgtcagcgatgaaacactgcgtgaaatagcacaacattgtcctaatcttggttttcttgatgcatcatactgcccaaacatatctttgga |
3865100 |
T |
|
| Q |
317 |
ggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagtatatggct------------------tttctcttttaa |
398 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||| |||| ||||||||||||| | ||| | | ||| ||||| |||||| |
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|
| T |
3865101 |
ggtgtgctttaaactgtatact-tattttttgcatatttaagattgtattttgaacaagagtttctagctttgtctgacacggtcacctttcttttttaa |
3865199 |
T |
|
| Q |
399 |
gtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagctcatagctctatgttggag |
498 |
Q |
| |
|
||| ||||| | |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||| |
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|
| T |
3865200 |
gtctgttcgactcccaatgttgaccattctaagacttcatagctgtgagggcatcacttctgcgtcaatggctgcaatagctcacagttctatgttggag |
3865299 |
T |
|
| Q |
499 |
gtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcaccccgccaatgcaggttttgtaac |
598 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| ||| ||||||||||| |||||||| || | ||||| || | | |||||||||||||||| | | |
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|
| T |
3865300 |
gtatgttatttgttccagatattgatattaacgacttgtctgaattcccgagtattaggacgagtacatgacataa--ctgccaatgcaggttttggagc |
3865397 |
T |
|
| Q |
599 |
tccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagtatgtttctgcttcattttc |
698 |
Q |
| |
|
| || ||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3865398 |
ttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaatattagattggtgtactgtcgcaagtatgtttctgcttcattttc |
3865497 |
T |
|
| Q |
699 |
tctctccccagaaaag |
714 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3865498 |
tctctccccagaaaag |
3865513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 819 - 943
Target Start/End: Original strand, 3865609 - 3865732
Alignment:
| Q |
819 |
gaatggtttcctttgcagattagcagatttgaacttgagggctatatcgctttcttctatacaagtggtctgactgctctgtacttcaccggatcaatat |
918 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |
|
|
| T |
3865609 |
gaatggtttccttggcagattagcagatttgaatttgagagctatatcgctttcttctatacaagt-gtctaactgctctgtactccaccggatcaatat |
3865707 |
T |
|
| Q |
919 |
cacttcaaattcacttcaagtatgt |
943 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3865708 |
cacttcaaattcacttcaagtatgt |
3865732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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