View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5301-Insertion-7 (Length: 961)

Name: NF5301-Insertion-7
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5301-Insertion-7
NF5301-Insertion-7
[»] chr2 (3 HSPs)
chr2 (7-956)||(7381753-7382702)
chr2 (921-956)||(23863878-23863913)
chr2 (923-956)||(41095863-41095896)
[»] chr7 (1 HSPs)
chr7 (844-953)||(32694569-32694677)
[»] chr5 (2 HSPs)
chr5 (835-956)||(33858528-33858648)
chr5 (921-956)||(38010689-38010724)
[»] chr1 (2 HSPs)
chr1 (844-912)||(46435464-46435532)
chr1 (921-956)||(32676197-32676232)
[»] chr4 (2 HSPs)
chr4 (921-961)||(33249449-33249489)
chr4 (850-892)||(35781033-35781075)
[»] chr6 (1 HSPs)
chr6 (921-956)||(34245628-34245663)
[»] chr3 (2 HSPs)
chr3 (921-956)||(47186236-47186271)
chr3 (921-960)||(50934557-50934596)


Alignment Details
Target: chr2 (Bit Score: 737; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 7 - 956
Target Start/End: Complemental strand, 7382702 - 7381753
Alignment:
Q  7 aagcaacttcttggtttaatggcttaagaaatctatttataaacactggcagctataaaatattatttctacaaacaaatatgcttaaactgcttt-aaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  7382702 aagcaacttcttggtttaatggcttaagaaatctatttataaacactggcagctataaaatattatttctacaaaaaaatatgcttaaactgcttttaaa 7382603  T
Q  106 atttcttatttatgtgcttacaaa-------gagtgctacaaaatatatttttattgatttgttaaaaataattaatataa----aacgtggtataaatt 194  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  7382602 atttcttatttatgtgcttacaaattacaaagagtgctacaaaatatatttttattgatgtgttaaaaataattaatataattaaaacgtggtataaatt 7382503  T
Q  195 tt-attgcgccgttattattcattgggtacagacaatattttatttcaaaacttgatcgtttctaatataatttacagtcgatgttataaactttttaat 293  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7382502 tttattgcgccgttattattcattgggtacagacaatattttatttcaaaacttgatcgtttctaatataatttacagtcgatgttataaactttttaat 7382403  T
Q  294 tgatttaaatttacatagtttttaaatatcaacttgagtttactcnnnnnnnntatcaacttgagtataatttattttttaaaagcaaactcaactacac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  7382402 tgatttaaatttacatagtttttaaatatcaacttgagtttactcaaaaaaaatatcaacttgagtataatttattttttaaaagcaaactcaactacac 7382303  T
Q  394 atgacactgatacattaaagatgnnnnnnnnnnnnnnnnnnnctttctaatttgtaccatgtacaagtaatgtatgaaagataagtgaaaagtcaaatac 493  Q
    |||||||||||||||||||||||                   |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  7382302 atgacactgatacattaaagatgtttttttt-----------ctttctaatttgcaccatgtacaagtaatgaatgaaagataagtgaaaagtcaaatac 7382214  T
Q  494 gacaattgcaaaagcgtgcaagtgaataaaataacatggattaagtttcctcccagacaaggatcaaaaacaaaactgttatgagtacaggataaaacaa 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7382213 gacaattgcaaaagcgtgcaagtgaataaaataacatggattaagtttcctcccagacaaggatccaaaacaaaactgttatgagtacaggataaaacaa 7382114  T
Q  594 ttggaatcaaaatcaaatgcatgcaaaatgattggcaaagtgattataaccaaagaataagttaataaaagaaatttctttaatatctccacaaaagtac 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7382113 ttggaatcaaaatcaaatgcatgcaaaatgattggcaaagtgattataaccaaagaataagttaataaaagaaatttctttaatatctccacaaaagtac 7382014  T
Q  694 atttaaacagtaataatccttccatatagatccaaacaacaaacaaaacaatatccacccatcctcaaaactaaagtttccttaagccaaccattcttgt 793  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7382013 atttaaacagtaataatccttccatatagatccaaacaacaaacaaaacaatatccacccatcctcaaaactaaagtttccttaagccaaccattcttgt 7381914  T
Q  794 tggcacattattaaatatatacatggaccccactaatctagtaaaatacagatagaacttgcgtactataatggtttataccattgcccaattaaaatgc 893  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||     
T  7381913 tggcacattaataaatatatacatggaccccactaatctagtaaaatacggatagaacttgcgtactataatggtatatactattgcccaattaaaatgt 7381814  T
Q  894 gttatatgacacaccctttnnnnnnnntatatcaaataaagaatttataaagtaacattggta 956  Q
    || | |||||||| |||||        ||||||||||||||||||||||||||||||||||||    
T  7381813 gtcacatgacacatccttt--aaaaaatatatcaaataaagaatttataaagtaacattggta 7381753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 921 - 956
Target Start/End: Original strand, 23863878 - 23863913
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggta 956  Q
    |||||||||||||| |||||||||||||||||||||    
T  23863878 tatatcaaataaagcatttataaagtaacattggta 23863913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 923 - 956
Target Start/End: Original strand, 41095863 - 41095896
Alignment:
Q  923 tatcaaataaagaatttataaagtaacattggta 956  Q
    |||||||||||| |||||||||||||||||||||    
T  41095863 tatcaaataaagcatttataaagtaacattggta 41095896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 844 - 953
Target Start/End: Original strand, 32694569 - 32694677
Alignment:
Q  844 gatagaacttgcgtactataatggtttataccattgcccaattaaaatgcgttatatgacacaccctttnnnnnnnntatatcaaataaagaatttataa 943  Q
    ||||| ||||| ||||||||||||| |||||||||||| ||||| |||| || |  || ||||||||||        |||||||||||||||||||||||    
T  32694569 gatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaa-tatatcaaataaagaatttataa 32694667  T
Q  944 agtaacattg 953  Q
    ||||||||||    
T  32694668 agtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 835 - 956
Target Start/End: Original strand, 33858528 - 33858648
Alignment:
Q  835 taaaatacagatagaacttgcgtactataatggtttataccattgcccaattaaaatgcgttatatgacacaccctttnnnnnnnntatatcaaataaag 934  Q
    ||||| || ||||| ||||| |||| |||||||| |||||||||||||||||| |||| || |  || ||||||||||        |||||||||||||     
T  33858528 taaaacacggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacacccttt-aaaaaagtatatcaaataaaa 33858626  T
Q  935 aatttataaagtaacattggta 956  Q
     |||||||||||||||||||||    
T  33858627 catttataaagtaacattggta 33858648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 921 - 956
Target Start/End: Original strand, 38010689 - 38010724
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggta 956  Q
    |||||||||||||| |||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggta 38010724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 844 - 912
Target Start/End: Original strand, 46435464 - 46435532
Alignment:
Q  844 gatagaacttgcgtactataatggtttataccattgcccaattaaaatgcgttatatgacacacccttt 912  Q
    ||||| ||||| |||| |||||||| |||||||||||||||||| |||| || || |||||||||||||    
T  46435464 gataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacacccttt 46435532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 921 - 956
Target Start/End: Complemental strand, 32676232 - 32676197
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggta 956  Q
    |||||||||||||| |||||||||||||||||||||    
T  32676232 tatatcaaataaagcatttataaagtaacattggta 32676197  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 921 - 961
Target Start/End: Original strand, 33249449 - 33249489
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggtaagtga 961  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  33249449 tatatcaaataaagcatttataaagtaacattggtaggtga 33249489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 850 - 892
Target Start/End: Complemental strand, 35781075 - 35781033
Alignment:
Q  850 acttgcgtactataatggtttataccattgcccaattaaaatg 892  Q
    |||||||||| |||||||| |||||||||||||||||| ||||    
T  35781075 acttgcgtaccataatggtatataccattgcccaattagaatg 35781033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 921 - 956
Target Start/End: Complemental strand, 34245663 - 34245628
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggta 956  Q
    |||||||||||||| |||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggta 34245628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 921 - 956
Target Start/End: Complemental strand, 47186271 - 47186236
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggta 956  Q
    |||||||||||||| |||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggta 47186236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 921 - 960
Target Start/End: Complemental strand, 50934596 - 50934557
Alignment:
Q  921 tatatcaaataaagaatttataaagtaacattggtaagtg 960  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtg 50934557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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