View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_high_14 (Length: 344)
Name: NF5301_high_14
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 11555975 - 11555716
Alignment:
| Q |
28 |
catagttttcgaaaaattacggtatgtatgtttggtagcactaagcgtatgtttggtagcattaagtagggcggacttggactcacaatattattgtggc |
127 |
Q |
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| T |
11555975 |
catagttttcgaaaaattacggtatgtatgtttggtagcactaagcgtatgtttggtagcactaagtagggcggacctggactcacaatattagtgtggc |
11555876 |
T |
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| Q |
128 |
nnnnnnnnttcccgtaaaaactaagtggatgttgttactcacctctaagtagcagattaattaagaatataatttgaaatataagattctggcaactagt |
227 |
Q |
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| T |
11555875 |
aaaaataattcccgtaaaaactaagtggatgttgttactcacctctaagtagcagattaattaagaatataatttgaaatataagattctggcaactaat |
11555776 |
T |
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| Q |
228 |
tatgtgaatcatggaatacttactaggtagaattctagtccatgaaattgaaaatctata |
287 |
Q |
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| T |
11555775 |
tatgtgaatcatggaatacttactaggtagaatcctagtccatgaaattgaaaatctata |
11555716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 326
Target Start/End: Original strand, 33499113 - 33499254
Alignment:
| Q |
184 |
ttaattaagaatataatttgaaatataagattctggcaactagttatgtgaatcatggaatacttactaggtagaattctagtccatgaaattgaaaatc |
283 |
Q |
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| T |
33499113 |
ttaattaagaatctaatttgaaagataaaattgtgg-aactagttatgtgaatcggggaatacttactaggtagaattctagaccatgaaattgaaaatc |
33499211 |
T |
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| Q |
284 |
tatatacatttattccaagtgatgacatcaatttgatatcttc |
326 |
Q |
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| T |
33499212 |
tatatacatttatcccaagtgatgacatcaatttgatatcttc |
33499254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 184 - 326
Target Start/End: Complemental strand, 33517912 - 33517767
Alignment:
| Q |
184 |
ttaattaagaatataatttgaaatataagattctggcaactagttatgtgaatcatgg---aatacttactaggtagaattctagtccatgaaattgaaa |
280 |
Q |
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| T |
33517912 |
ttaattaagaatctaatttgaaagataaaattgtggaaactagttttgtgaataattggagaatacttactaggtaaaatcctagtccatgaaattgaaa |
33517813 |
T |
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| Q |
281 |
atctatatacatttattccaagtgatgacatcaatttgatatcttc |
326 |
Q |
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| T |
33517812 |
atctatatacatttatcccaagtgatgacatcaatttgatatcttc |
33517767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 45102608 - 45102692
Alignment:
| Q |
241 |
gaatacttactaggtagaattctagtccatgaaattgaaaatctatatacatttattccaagtgatgacatcaatttgatatctt |
325 |
Q |
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| T |
45102608 |
gaatacttactaggtagaatcctagtccattaaattgaaaatctatatacatttaccccaagtgatgacatcaatttgatatctt |
45102692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 34307911 - 34307831
Alignment:
| Q |
225 |
agttatgtgaatcatggaatacttactaggtagaattctagtccatgaaattgaaaatctatatacatttattccaagtga |
305 |
Q |
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| T |
34307911 |
agttatgtgaatcagcgaatacttactgggtagaatcctagtccatgaaattgacaatctatatacatttaccccaagtga |
34307831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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