View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_high_21 (Length: 253)
Name: NF5301_high_21
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 41 - 239
Target Start/End: Complemental strand, 32268161 - 32267965
Alignment:
| Q |
41 |
ttgatttgttatctttgaatatctcagagatgagttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttctccaagattgcaccggc |
140 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32268161 |
ttgatttgttatctttgaatatctcaga--tgagttgctctcctctattgcataccaatgtcttcctttgacgaggcttgttctccaagattgcaccggc |
32268064 |
T |
|
| Q |
141 |
tatagctattatggaatcctttctttactatccaagtgtcaacatttccaacacttggatcttcaaaatgctgtttttctgaatgatgatcatgttgtg |
239 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32268063 |
tatagctattctggaatcctttctttactatccaagtgtcaacatttccaacacttggatcttcaaaatgctgtttttctgaaagatgatcatgttgtg |
32267965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 41900932 - 41901144
Alignment:
| Q |
25 |
aagtacttgacttctcttgatttgttatctttgaatatctcagagatgagttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttct |
124 |
Q |
| |
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||||| || |||||||||||||| || |||| ||||||||||| || ||| ||| |||||||||| | || |||| |||||||| ||||||||||| |
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| T |
41900932 |
aagtatttaacttctcttgatttattgtcttccaatatctcaga--tgtgtttctcatctctattgcaatccaaggtctacctttgactaggcttgttct |
41901029 |
T |
|
| Q |
125 |
ccaagattgcaccggctatagctattatggaatcctttctttactatccaagtgtcaacatttccaacacttggatcttcaaaatgctgtttttctgaat |
224 |
Q |
| |
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|||| |||||||||| ||||| |||| |||||| ||| |||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| || |
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| T |
41901030 |
ccaaaattgcaccggttatagttattctggaattatttgtttactgtccaagtgtcaacatttaaaacatttggatcttgaaaatgctgtttttctcaaa |
41901129 |
T |
|
| Q |
225 |
gatgatcatgttgtg |
239 |
Q |
| |
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||||| ||||||||| |
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|
| T |
41901130 |
gatgaacatgttgtg |
41901144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 41888927 - 41889160
Alignment:
| Q |
7 |
tcctctttggtgagcttgaagtacttgacttctcttgatttgttatctttgaatatctcagagatgagttgctctcctctattgcatacgaaagtcttcc |
106 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||| |||||||||||||| || |||| |||| |||||||||||| || || ||| |
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| T |
41888927 |
tcctgtttggtgagtttgaagtacttgacttgtcttgatttgttttctttgaatatctccga--tgagatgctttcctctattgcaatgcaaggttttct |
41889024 |
T |
|
| Q |
107 |
tttgacgaggcttgttctcc----aagattgcaccggctatagctattatggaatcctttctttactatccaagtgtcaacatttccaacacttggatct |
202 |
Q |
| |
|
|||||| ||| | ||||||| || |||||||||||| ||| ||| ||||||| ||| |||||||||||||||| ||||| |||||| |||||||| |
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| T |
41889025 |
tttgactagg-tggttctccctacaaaattgcaccggctttagttatgctggaatcttttgtttactatccaagtgtgaacatatccaacttttggatct |
41889123 |
T |
|
| Q |
203 |
tcaaaatgctgtttttctgaatgatgatcatgttgtg |
239 |
Q |
| |
|
||||||| ||||||||||||| || | ||||||||| |
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|
| T |
41889124 |
tcaaaatattgtttttctgaatcataaacatgttgtg |
41889160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 27922783 - 27922680
Alignment:
| Q |
35 |
cttctcttgatttgttatctttgaatatctcagagatgagttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttctccaagattgc |
134 |
Q |
| |
|
||||||||||||| || |||| ||||||||| || ||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||| |
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|
| T |
27922783 |
cttctcttgatttattgtcttcgaatatctcgga--tgagttgctctcctctattgccaccgaacgtctacctttgacgaggcttgttctccaatattgc |
27922686 |
T |
|
| Q |
135 |
accggc |
140 |
Q |
| |
|
| |||| |
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|
| T |
27922685 |
atcggc |
27922680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 51763831 - 51764043
Alignment:
| Q |
13 |
ttggtgagcttgaagtacttgacttctcttgatttgttatctttgaatatctcagagatgagttgctctcctctattgcatacgaaagtcttcctttgac |
112 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| |||||| ||||| || ||||||||||| ||| |||||| ||| |||||| ||||| |
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|
| T |
51763831 |
ttggtgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctga--tgagttgctctactcgattgcaagggaaggtcttcttttgaa |
51763928 |
T |
|
| Q |
113 |
gaggcttgttctccaagattgcaccggctatagctattatggaatcctttctttactatccaagtgtcaacatttccaacacttggatcttcaaaatgct |
212 |
Q |
| |
|
|||||||| || ||| |||||| |||||||| ||| ||||||| ||| ||| ||||||| ||||||| ||| |||| |||||||||||| ||||| |
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|
| T |
51763929 |
aaggcttgtccttcaaatttgcacgggctatagttatgctggaatcatttgtttggtatccaactgtcaacgtttgaaacatttggatcttcaagatgct |
51764028 |
T |
|
| Q |
213 |
gtttttctgaatgat |
227 |
Q |
| |
|
| ||||||||||||| |
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|
| T |
51764029 |
ggttttctgaatgat |
51764043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 3438120 - 3438228
Alignment:
| Q |
100 |
gtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattatggaatcctttctttactatccaagtgtcaacatttccaacacttgga |
199 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||||||||||| ||| || |||| ||||| | |||||||||||||| | | ||||| ||||| |
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|
| T |
3438120 |
gtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtcaatgtatacaacatttgga |
3438219 |
T |
|
| Q |
200 |
tcttcaaaa |
208 |
Q |
| |
|
||||||||| |
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|
| T |
3438220 |
tcttcaaaa |
3438228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 21833823 - 21833929
Alignment:
| Q |
69 |
gatgagttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattatggaatcctttctttac |
168 |
Q |
| |
|
|||||||| |||| |||||||||| ||| |||||||||| ||||||||||| || | | | |||||||||||||| ||| |||||||| ||| ||| |
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|
| T |
21833823 |
gatgagttactctactctattgcaagggaaggtcttcctttaacgaggcttgtccttcgaaaatgcaccggctatagttatgatggaatcttttgtttgt |
21833922 |
T |
|
| Q |
169 |
tatccaa |
175 |
Q |
| |
|
||||||| |
|
|
| T |
21833923 |
tatccaa |
21833929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 547571 - 547427
Alignment:
| Q |
74 |
gttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattatggaatcctttctttactatcc |
173 |
Q |
| |
|
||||||||||||||||||| ||| | ||||||||| | |||||| |||||| |||| ||||||||| ||| |||||| || ||| | ||| |
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|
| T |
547571 |
gttgctctcctctattgcaatggaagctattcctttgagaaagcttgtcctccaaaattgtttcggctatagttatgctggaatatcttgttttttgtcc |
547472 |
T |
|
| Q |
174 |
aagtgtcaacatttccaacacttggatcttcaaaatgctgttttt |
218 |
Q |
| |
|
||||| |||||| ||||||| || ||||||||||||||||||||| |
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|
| T |
547471 |
aagtgccaacatatccaacatttagatcttcaaaatgctgttttt |
547427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 1755156 - 1755051
Alignment:
| Q |
52 |
tctttgaatatctcagagatgagttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttctccaagattgcaccggctatagctatta |
151 |
Q |
| |
|
|||||||||||||| || |||| |||| | |||||||||| ||||||||||||||| ||||||||| || | |||||||||||||||| ||| | |
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|
| T |
1755156 |
tctttgaatatctcgga--tgagctgctgtactctattgcaatgaaaagtcttcctttgaagaggcttgtgcttggacattgcaccggctatagttatga |
1755059 |
T |
|
| Q |
152 |
tggaatcc |
159 |
Q |
| |
|
|||||||| |
|
|
| T |
1755058 |
tggaatcc |
1755051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 17352303 - 17352146
Alignment:
| Q |
70 |
atgagttgctctcctctattgcatacgaaagtcttcctttgacgaggcttgttctccaagattgcaccggctatagctattatggaatcctttctttact |
169 |
Q |
| |
|
|||| |||||||||||||||||| | || || ||||||| | ||| ||||| || ||| ||| ||| ||||| || ||| ||||| ||||||| | |
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|
| T |
17352303 |
atgaattgctctcctctattgcaaaggagggttttcctttcaggagacttgtccttcaatattccactggctacagttatgctggaactttttctttgtt |
17352204 |
T |
|
| Q |
170 |
atccaagtgtcaacatttccaacacttggatcttcaaaatgctgtttttctgaatgat |
227 |
Q |
| |
|
||||||||| |||| | ||||||| | ||||||||||| ||||| |||||||| |||| |
|
|
| T |
17352203 |
atccaagtgccaacgtatccaacattaggatcttcaaactgctggttttctgagtgat |
17352146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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