View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_high_24 (Length: 242)
Name: NF5301_high_24
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 34607581 - 34607401
Alignment:
| Q |
60 |
acacactttatgattaatttgtgtgtggttggttgaattgtagggaagatatacaaggatgcaggtgcatcatctggtgagctattggtacttgcactag |
159 |
Q |
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| T |
34607581 |
acacactttatgattaatttgtgtgtggttggttgaattgtagggaagatatacaaggatgcaggtgcatcatctggtgagctattggtacttgcaatag |
34607482 |
T |
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| Q |
160 |
ctcatgcattttcactatttgcagctatatcatctagcatgcatgtatctggtggacatataaaccctgctgttacctttg |
240 |
Q |
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| T |
34607481 |
ctcatgcattttcactatttgcagctatatcatctagcatgcatgtatctggtggacatataaaccctgctgttacttttg |
34607401 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 24832853 - 24832916
Alignment:
| Q |
151 |
ttgcactagctcatgcattttcactatttgcagctatatcatctagcatgcatgtatctggtgg |
214 |
Q |
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|||||||||| ||||||||| | |||||||| ||| | || || |||||||||||||||||||| |
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| T |
24832853 |
ttgcactagcacatgcatttgctctatttgctgctgtgtcttccagcatgcatgtatctggtgg |
24832916 |
T |
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