View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_high_4 (Length: 631)
Name: NF5301_high_4
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 37061232 - 37060731
Alignment:
| Q |
19 |
gagatcgagtgtgtggagatttgtgagagaggagaatgtggcgggaatggtgccggtgaagcggttgttggggagggagatgacacggaggttggtgagt |
118 |
Q |
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| T |
37061232 |
gagatcgagtgtgtggagatttgtgagagaggagaatgtggcgggaatggtgccggtgaagcggttgttggggagggagatgacacggaggttggtgagt |
37061133 |
T |
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| Q |
119 |
tgagcgagctgaggtgggatggaaccagttacgattccgggggagagtatgagctgggttaactcggtgagggaggagatggaggaggggagtgagccgg |
218 |
Q |
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| T |
37061132 |
tgagcgagctgaggtgggatggaaccagttacgattccgggggagagtatgagctgggttaactcggtgagggaggagatggaggaggggagtgagccgg |
37061033 |
T |
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| Q |
219 |
cgagggggtgtctgtcgataccgagtgagagaatggtgactcggttgaaggtgcaggtgatgccggagaaggtggtgcagggatttggggaggtgaagtt |
318 |
Q |
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| T |
37061032 |
cgagggggtgtctgtcgataccgagtgagagaatggtgactcggttgaaggtgcaggtgatgccggagaaagtggtgcagggatttggggaggtgaagtt |
37060933 |
T |
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| Q |
319 |
ccatgttgagaagaaggagtttgtgggtgagattgaggtgagagtgttttttatggaaagaagagctttgagatctaaggggttcattttttgagaatta |
418 |
Q |
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| T |
37060932 |
ccatgttgagaagaaggagtttgtgggtgagattgaggtgagagtgttttttatggaaagaagagctttgagatctaaggggttcattttttgagaatta |
37060833 |
T |
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| Q |
419 |
gcataagggggtgtgaaaagtagaacttgtagaagaagaagagccacaaaggttgccattcgtgagtgtgtttggaagcagaagtgatgagaaaactttt |
518 |
Q |
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| T |
37060832 |
gcataagggggtgtgaaaagtagaacttgtagaagaagaagagccacaaaggttgccattcgtgagtgtgtttggaagcagaagtgatgagaaaactttt |
37060733 |
T |
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| Q |
519 |
gg |
520 |
Q |
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| T |
37060732 |
gg |
37060731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 562 - 622
Target Start/End: Complemental strand, 37060723 - 37060663
Alignment:
| Q |
562 |
acagtacagtacagatgttttgggaactttgggattagtttttggacttttgtagtattat |
622 |
Q |
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| T |
37060723 |
acagtacagtacagatgttttgggaactttgggattagtttttggacttttgtagtattat |
37060663 |
T |
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