View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_high_6 (Length: 431)
Name: NF5301_high_6
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 43530676 - 43530273
Alignment:
| Q |
18 |
ctactatccgcagcttcaaccacacactcttttgcatacaactccctcacccaatcaataagcacaacctcctcctccaccacatccgtctccaacggcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43530676 |
ctactatccgcagcttcaaccacacactcttttgcatacaactccctcacccaatcaataagcacaacctcctcctccaccacatccgtctccaacggcc |
43530577 |
T |
|
| Q |
118 |
tccttccacaagccacctccaacaacaccaccccaaaactatacacatcgctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaataccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43530576 |
tccttccacaagccacctccaacaacaccaccccaaaactatacacatcgctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaataccc |
43530477 |
T |
|
| Q |
218 |
taaagtccccaccacacgtgtggtattaggaacttgcccatgttggtaaagcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43530476 |
taaagtccccaccacacgtgtggtattaggaacttgcccatgttggtaaagcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaac |
43530377 |
T |
|
| Q |
318 |
aaaatgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgcc |
417 |
Q |
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| T |
43530376 |
aaaatgttactagatttaatatccctatgaataacaacctggtcccaaccatgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgcc |
43530277 |
T |
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| Q |
418 |
tttg |
421 |
Q |
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|||| |
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| T |
43530276 |
tttg |
43530273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 51820949 - 51820988
Alignment:
| Q |
310 |
catccaacaaaatgttactagatttaatatccctatgaat |
349 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
51820949 |
catctaacaaaatgttactagatttaacatccctatgaat |
51820988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 364
Target Start/End: Original strand, 22912719 - 22912807
Alignment:
| Q |
276 |
aaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtccca |
364 |
Q |
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||||||||||| || ||||| || |||| |||||||| || |||| ||||||| |||||| || |||||||||||||| || ||||| |
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| T |
22912719 |
aaaccaaaatcacctaatctaccattcatttcaccatctaataaaacattactagctttaatgtctctatgaataacaacttgttccca |
22912807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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