View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5301_low_1 (Length: 1243)
Name: NF5301_low_1
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 1115; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1115; E-Value: 0
Query Start/End: Original strand, 1 - 1220
Target Start/End: Original strand, 37402394 - 37403612
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402394 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
37402493 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaattatatactatatcttttaataccagtttattatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402494 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaattatatactatatcttttaataccagtttattatat |
37402593 |
T |
|
| Q |
201 |
atttcaagttgttaaacaaataagaaatttatagtgatgaatttatactataaaatgctcaagacttaattgcttcaacttttgatannnnnnnnnnnnc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
37402594 |
atttcaagttgttaaacaaataagaaatttatagtgatgaatttatactataaaatgctcaagacttaattgcttcaacttttttt-tttttttttcttc |
37402692 |
T |
|
| Q |
301 |
catctcattgtctcctggttgttagttatctcacgtatatcaatttgatgtttttaaccttttgaagaatatattttgaaagcatatcctcattatgtca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37402693 |
catctcattgtctcctggttgttagttatctcacgtatatcaatttgatgtttttaaccttttgaagaaaatattttgaaagcatatcctcattatgtca |
37402792 |
T |
|
| Q |
401 |
ataagtgttgatattttactattttgtacatagcttaaaatggcaagtaagcttgctatgtacctagtggcagcacaggtacaactttcaggaatctaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402793 |
ataagtgttgatattttactattttgtacatagcttcaaatggcaagtaagcttgctatgtacctagtggcagcacaggtacaactttcaggaatctaat |
37402892 |
T |
|
| Q |
501 |
tacaactataaaattgttcagaaagttcttaagctgtgcagtgaggtttagaagacacttcattctgttctagttgatatataatattagctttgggttc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37402893 |
tacaactataaaattgttcagaaagttcttaagctgtgcagtgaggtttagaagacacttcattctgttctagttgatatataatattagctttgggttc |
37402992 |
T |
|
| Q |
601 |
tccttgaatatgnnnnnnncttgaattaaactctattctccaactagtttttggactctaaatactcctacttttaacaacttttaaggtggaagagcaa |
700 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37402993 |
tccttgaatatgttttcttcttgaattaaactctattctccaactagtttttggactctaaatacacctacttttaacaacttttaaggtggaagagcaa |
37403092 |
T |
|
| Q |
701 |
agcagacaaattttggaattgaaaagtgctttaagtgctcacgtcagtgagatatagattgcggaaaagtagatgatgaatcacatcactatttcaaact |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37403093 |
agcagacaaattttggaattgaaaagtgctttaagtgctcacgtcagtgagatatagattgcggaaaagtagatgatgaatcacatcactatttcaaact |
37403192 |
T |
|
| Q |
801 |
attttgcatgaaatctgatactgcaaaagtagatgttttctatgttaccaccaacatgtggaaaacaatggctgatgaaaacaggtagaagtatgcataa |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37403193 |
attttgcatgaaatctgatactgcaaaagtagatgttttcgatgttaccaccgacatgtggaaaacaatggctgatgaaaacaagtagaagtatgcataa |
37403292 |
T |
|
| Q |
901 |
gaatgtatattccattaacacataaattactacattaaaaaggttaaactaggctacaagaaaattgaaccaacatagtttatttttgtcaaaccggctg |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37403293 |
gaatgtatattccattaacacataaattactacattaaaaaggttaaactaggctacaagaaaattgaaccaacatagtttatttttgtcaaaccggctg |
37403392 |
T |
|
| Q |
1001 |
atcgtctacgacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggcggctagcgtggggtgaatattttcaatgcct |
1100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37403393 |
atcgtctacaacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggctgctagcgtggggtgaatattttcaatgcct |
37403492 |
T |
|
| Q |
1101 |
gagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagatagagcaaacatgtaattttgctccatgatcatgat |
1200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37403493 |
gagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagatagagcaaacatgtaattttgctccatgatcatgat |
37403592 |
T |
|
| Q |
1201 |
tatgacccaacttatcaagc |
1220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37403593 |
tatgacccaacttatcaagc |
37403612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 8e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 37531864 - 37531698
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531864 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
37531765 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37531764 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
37531698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 8e-89
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 37592968 - 37592802
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37592968 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
37592869 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37592868 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
37592802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 5e-84
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 37695359 - 37695201
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695359 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
37695260 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37695259 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtt |
37695201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 37638510 - 37638344
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| ||||||| | |||||| |||||||| |||||||||| ||||||||| | |||| |
|
|
| T |
37638510 |
aatgtattcttcttcactggtaaacccgaatggcttgcaagacatgttgaacatatgtttgacataagattgaaaagaacgaacaacagagccatcgcaa |
37638411 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
167 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
37638410 |
atcgcagaagaatgaattaattggatgagggtcttttcaaatatgtagttacaactgtttgtaatta |
37638344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 37710271 - 37710105
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| ||| ||||||| | |||||| |||||||| |||||||||||||||||||| | |||| |
|
|
| T |
37710271 |
aatgtattcttcttcaccggtaaacccgaatggcttgtaagacatgttgaacatatgtttgacataagattgaaaagaacaaacaacagagccatcgcaa |
37710172 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
167 |
Q |
| |
|
|||||||||||||||||||||| |||| | || ||||||||||||||| || | ||||||||||||| |
|
|
| T |
37710171 |
atcgcagaagaatgaattaattggatgatggtgttttcaaatatgtagatataactgtttgtaatta |
37710105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 37822668 - 37822502
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| ||||||| | |||||| |||||||| |||||||||| ||||||||| | |||| |
|
|
| T |
37822668 |
aatgtattcttcttcactggtaaacccgaatggcttgcaagacatgttgaacatatgtttgacataagattgaaaagaacgaacaacagagccatcgcaa |
37822569 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgtaatta |
167 |
Q |
| |
|
|||||| ||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
37822568 |
atcgcataagaatgaattaattggatgagggtcttttcaaatatgtagttacaactgtttgtaatta |
37822502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 37394282 - 37394444
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||| ||||||||| ||||||||||||||| |||||||| ||||||| ||| | || |
|
|
| T |
37394282 |
aatgtattcttcttcactggaaaaccccaatggcttgcaagacatgttgaaaatatgtttaacataagattgaaaagatcaaacaatagagccaacttaa |
37394381 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttgtattttcaaatatgtagttacagctgtttgta |
163 |
Q |
| |
|
|||| ||||| |||||||||||||||| || ||||||||||| || |||| ||||||||| |
|
|
| T |
37394382 |
atcgtagaaggatgaattaatttgatgagggtgttttcaaatatataaatacaactgtttgta |
37394444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37434474 - 37434389
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaa |
86 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||||| ||||||| | | ||||||||||||| |||||||||||||||| |
|
|
| T |
37434474 |
aatgtattcttcttcactggaaaaccccaatggcttcttagacttgttgagcatacgtttaacataagaatgaaaagaacaaacaa |
37434389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 37439830 - 37439710
Alignment:
| Q |
5 |
tattcttcttcactggtaaacctcaatggcttgttagaattgttgaaa-acatgtttaacataagactgaaaagaacaaacaacagatactgtgcaaatc |
103 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||| ||||| |||||| | |||| |||||||||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
37439830 |
tattcttcttcactggaaaacctgaatgacttcttagacttgttggcatacat--ttaacataagactgaaaagaacaaacaattgatcccttgcaaatc |
37439733 |
T |
|
| Q |
104 |
gcagaagaatgaattaatttgatg |
127 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
37439732 |
aca-tagaatgaattaatttgatg |
37439710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 37394479 - 37394557
Alignment:
| Q |
164 |
attatatactatatcttttaataccagtttattatatatttcaagttgttaaacaaataagaaatttatagtgatgaatt |
243 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | ||||||||||||||||| | || ||||||| ||||||||||||| |||| |
|
|
| T |
37394479 |
attatata-tatatcttttagtaccagtgtgttatatatttcaagttgatgaataaataaggaatttatagtgatcaatt |
37394557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37701453 - 37701412
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttaga |
42 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
37701453 |
aatgtattcttcttcactggaaaacctcaatggcttcttaga |
37701412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 8e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 8e-95
Query Start/End: Original strand, 905 - 1219
Target Start/End: Original strand, 38240150 - 38240468
Alignment:
| Q |
905 |
gtatattccattaacacataaattactacattaaaaaggttaaactaggctacaagaaaattgaaccaacatagtttatttttgtcaaaccggctgatcg |
1004 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||| |||||||| |
|
|
| T |
38240150 |
gtatattccattaacacacaaattaccacattaaaaaggttaaactaggctactagaaaattgagccaatcaagtttattattgtcaaacaggctgatca |
38240249 |
T |
|
| Q |
1005 |
tctacgacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggcggctagcgtggggtgaatattttcaatgcctgagg |
1104 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||| ||| || | ||||||||| |||||| |||| ||| |
|
|
| T |
38240250 |
tcttcgacaggaaacgttgcaacagatgtctcgaatacttaccgtacgtcaaactgctcgatggctgcttgctttgggtgaatactttcaacgcctaagg |
38240349 |
T |
|
| Q |
1105 |
gatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagat---agagcaaacatgtaatttt-gctccatgatcatgat |
1200 |
Q |
| |
|
||||||| |||||||||||||| | |||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
38240350 |
gatttgagcaaactttggaccaatcgtcctcgtgaacctgcatagtcttcatgcaagagatagaagagcaaacctgtaattttagctccatgatcatgat |
38240449 |
T |
|
| Q |
1201 |
tatgacccaacttatcaag |
1219 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
38240450 |
tatagcccaacttatcaag |
38240468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 487 - 663
Target Start/End: Original strand, 38239218 - 38239392
Alignment:
| Q |
487 |
ttcaggaatctaattacaactataaaattgttcagaaagttcttaagctgtgcagtgaggtttagaagacacttcattctgttctagttgatatataata |
586 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
38239218 |
ttcaggaatctaataacaactataatattgttcagaaagttcttgagctgtgcagtaaagtttaga---cacttcattctgttctggttgatatataata |
38239314 |
T |
|
| Q |
587 |
ttagctttgggttctccttgaatat-gnnnnnnncttgaattaaactctattctccaactagtttttggactctaaat |
663 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
38239315 |
ttagctttgggctctccttgagtatattttccttcttgtattgaactctattctaaaactagtttttggactctaaat |
38239392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 785 - 868
Target Start/End: Original strand, 38239540 - 38239623
Alignment:
| Q |
785 |
atcactatttcaaactattttgcatgaaatctgatactgcaaaagtagatgttttctatgttaccaccaacatgtggaaaacaa |
868 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
38239540 |
atcactatttcaaactattttgcatgaaatctgatgctgcaaaagtagatgttttctatgttatcactggcatgtggaaaacaa |
38239623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 688 - 741
Target Start/End: Original strand, 38239442 - 38239495
Alignment:
| Q |
688 |
ggtggaagagcaaagcagacaaattttggaattgaaaagtgctttaagtgctca |
741 |
Q |
| |
|
||||||||||| || ||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
38239442 |
ggtggaagagctaaacagacaaatgttggaattgaaaggtgctttaagtgctca |
38239495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 16844392 - 16844559
Alignment:
| Q |
1 |
aatgtattcttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||| ||| ||||||| ||||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
16844392 |
aatgtattcttcttcactggaaaaccccaatgccttgcaagacatgttgaacgtatgtttaacataagattgaaaagaacaatcaacagagcaaccgcaa |
16844491 |
T |
|
| Q |
101 |
atcgcagaagaatgaattaatttgatgtttg-tattttcaaatatgtagttacagctgtttgtaatta |
167 |
Q |
| |
|
||||| |||||||||||||||| |||| | | ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
16844492 |
atcgccgaagaatgaattaattggatgagggtttttttcaaatatgtagatacaactgtttgtaatta |
16844559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 24219133 - 24219242
Alignment:
| Q |
10 |
ttcttcactggtaaacctcaatggcttgttagaattgttgaaaacatgtttaacataagactgaaaagaacaaacaacagatactgtgcaaatcgcagaa |
109 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| |||||||| ||| |||| ||||||| ||||||| |||||||| | | ||||||||||||||| |
|
|
| T |
24219133 |
ttcttcactgggaaacctcaatggcttgcaagacatgttgaaagcatatttagcataagattgaaaaggacaaacaagaaagttggtgcaaatcgcagaa |
24219232 |
T |
|
| Q |
110 |
gaatgaatta |
119 |
Q |
| |
|
|||||||||| |
|
|
| T |
24219233 |
gaatgaatta |
24219242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 16844624 - 16844694
Alignment:
| Q |
173 |
tatatcttttaataccagtttattatatatttcaagttgttaaacaaataagaaatttatagtgatgaatt |
243 |
Q |
| |
|
||||||||||||||||| | | |||||||| |||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
16844624 |
tatatcttttaataccaatgtgctatatattgtaagttgttgaacaaataagaaatttatagtgatcaatt |
16844694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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