View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_11 (Length: 367)
Name: NF5301_low_11
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 362
Target Start/End: Complemental strand, 4776395 - 4776053
Alignment:
| Q |
20 |
gagtcgaaattataccaaccaggactggcttatttcttacacaagatcattacataagagatattctccttcgagcaaacatgggcgactgcaaacctgt |
119 |
Q |
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| T |
4776395 |
gagtcgaaattataccaaccaggactggcttatttcttacacaagatcatcacataagagatattctccttcgagcaaacatgggcgactgcaaacctgt |
4776296 |
T |
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| Q |
120 |
gtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgccttacactac |
219 |
Q |
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| T |
4776295 |
gtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttacactac |
4776196 |
T |
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| Q |
220 |
ctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtat |
319 |
Q |
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| T |
4776195 |
ctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagagagtat |
4776096 |
T |
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| Q |
320 |
tgcgctatctcaaatccaccatctccaatggacttcatttcac |
362 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
4776095 |
tgcgctatctcaaatccaccatctccaatggactccatctcac |
4776053 |
T |
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