View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_12 (Length: 363)
Name: NF5301_low_12
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 29 - 342
Target Start/End: Original strand, 42212506 - 42212835
Alignment:
| Q |
29 |
tcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtaagttcatctaattatg |
128 |
Q |
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| T |
42212506 |
tcttatagatttatgaaaaggactttggaactt-gttaagttgcgaaatcaattcgatgacatgaatatgttattagctcggtaagttcatctaattatg |
42212604 |
T |
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| Q |
129 |
cagatttactgagtattgatcatcaatttgtgaattttttgttttggtagaatcataagacgaattctatttatcggtacctagttttaagtacaaaaag |
228 |
Q |
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| T |
42212605 |
cagatctactgagtattgatcatcaatttgtgaattttttgttttggtagaatcatacgacgaattctatttattggtacctagttttaagtacaaaaag |
42212704 |
T |
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| Q |
229 |
catcacat-----------------ataatcaataaatatgtgtgaataaatagatagtaaaaaccataggtgaatttgtaacatgatgttaattgttat |
311 |
Q |
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| T |
42212705 |
catcacatataagataggatatgacataatcaataaatatgtgtgaataaatagatagtaaaaaccataggtgaatttgtaacatgatgttaattgttat |
42212804 |
T |
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| Q |
312 |
ccatttcacactgcaattcacgtgtaatttg |
342 |
Q |
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| T |
42212805 |
ccatttcacactgcaattcatgtgtaatttg |
42212835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 42205307 - 42205525
Alignment:
| Q |
18 |
tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtaagttc |
117 |
Q |
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| T |
42205307 |
tttggaaatgatcttatagatttatgaataagaacttggaattttgttaatttgcaaattcaattcgatgacatgaatatgttattagctcggtgagctc |
42205406 |
T |
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| Q |
118 |
atctaattatgcagatttactgagtattgatcatcaatttgtgaatt-ttttgttttg-gtagaatcataagacgaattctatttatcggtacctagttt |
215 |
Q |
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| T |
42205407 |
atc---ttacgcaaatctactgagaattgatcatcaatttgtgaattattttgttttgcctaagatcttaagaggaattttattt---ggtaccaagttt |
42205500 |
T |
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| Q |
216 |
taagtacaaaaagcatcacatataa |
240 |
Q |
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||||||||||||| ||||||||||| |
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| T |
42205501 |
taagtacaaaaagtatcacatataa |
42205525 |
T |
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Back To:
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