View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5301_low_13 (Length: 346)
Name: NF5301_low_13
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5301_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 55373249 - 55372935
Alignment:
| Q |
14 |
attatactgactttgatgatatataaattaaaatattgagttgttgatgaatgtgcagggtaagatttggttatgctcatgtggtgaacaacaaatatga |
113 |
Q |
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| T |
55373249 |
attatattgactttgatgatatataaattaaaatattgagttgttgatgaatgtgcagggtaagatttggttatgctcatgtggtgaacaacaaatatga |
55373150 |
T |
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| Q |
114 |
tcagtggcaaatgtatgctataggaggaagtgctaacccaaccattttaagtgaaggcaacttttataatgcaccaaatgaccatactaaaaaacaggta |
213 |
Q |
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| T |
55373149 |
tcagtggcaaatgtatgctataggaggaagtgctaacccaaccattttaagtgaaggcaacttttataatgcaccaaatgaccatactaaaaaacaggta |
55373050 |
T |
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| Q |
214 |
aaaacaaacatagtattaagaataatatatagtttaattaatttcataattcaatcatttaagatattgactttggtgtggttatttatttttgtacgtg |
313 |
Q |
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| T |
55373049 |
aaaacaaacatagtattaagaataatatatagtttaattaatttcataattcaatcatttaagatattgactttggtgtggttatttatttttgtacgtg |
55372950 |
T |
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| Q |
314 |
tgacagattaccaag |
328 |
Q |
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| T |
55372949 |
tgacagattaccaag |
55372935 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 8526248 - 8526154
Alignment:
| Q |
67 |
tgcagggtaagatttggttatgctcatgtggtgaacaacaaatatgatcagtggcaaatgtatgctataggaggaagtgctaacccaaccatttt |
161 |
Q |
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| T |
8526248 |
tgcagggtaagatttggttatgcccatgttgtaaacaaccgatacgatgagtggatcatgtatgccattggtggtagtgctgaccctaccatttt |
8526154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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