View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5301_low_16 (Length: 300)

Name: NF5301_low_16
Description: NF5301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5301_low_16
NF5301_low_16
[»] chr3 (2 HSPs)
chr3 (8-224)||(513845-514061)
chr3 (178-225)||(51763736-51763783)
[»] chr4 (4 HSPs)
chr4 (175-223)||(1601177-1601225)
chr4 (171-223)||(21833637-21833689)
chr4 (174-225)||(371296-371347)
chr4 (174-222)||(53761152-53761200)
[»] chr6 (2 HSPs)
chr6 (171-216)||(6588612-6588657)
chr6 (168-221)||(9411803-9411856)
[»] chr5 (4 HSPs)
chr5 (171-207)||(28532497-28532533)
chr5 (167-225)||(32268231-32268289)
chr5 (175-225)||(41900804-41900854)
chr5 (168-225)||(41886922-41886979)
[»] chr1 (1 HSPs)
chr1 (174-222)||(19467779-19467827)
[»] chr8 (2 HSPs)
chr8 (174-225)||(18314970-18315021)
chr8 (90-134)||(18314886-18314930)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 513845 - 514061
Alignment:
Q  8 tggtgatgggataaaggctcgttcagactcacttttccaactacgcaagattgatctctctgctcatcgtcacttgaataaccaattgcttttccacttg 107  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||| |||||||| || |||||| |||||||||||||    
T  513845 tggtgatgggataaaggctctttcagactcacttttccaactccgcaagattgatctctctcttcatagtcacttggatgaccaatcgcttttccacttg 513944  T
Q  108 ttcaagaactgtatgtttctcaaagaggttatcttattggagttgtatcctgtaaccagtgttggcattgcttctgctctccgtgagagaccaacattga 207  Q
    ||||| ||||||| | ||||  ||||||||||| | ||  | |   |||   ||||||     || ||||||||||||||||||||||||||||||||||    
T  513945 ttcaaaaactgtaagcttcttcaagaggttatcatctttaattgcgatcgcataaccaaacaaggtattgcttctgctctccgtgagagaccaacattga 514044  T
Q  208 catctttatccttttcc 224  Q
    | ||| |||||||||||    
T  514045 cctctatatccttttcc 514061  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 51763736 - 51763783
Alignment:
Q  178 cttctgctctccgtgagagaccaacattgacatctttatccttttcca 225  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  51763736 cttctgctctccgtgaaagaccaacattgacgtctttatccttttcca 51763783  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 1601225 - 1601177
Alignment:
Q  175 ttgcttctgctctccgtgagagaccaacattgacatctttatccttttc 223  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtctttatccttttc 1601177  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 21833637 - 21833689
Alignment:
Q  171 ggcattgcttctgctctccgtgagagaccaacattgacatctttatccttttc 223  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  21833637 ggcattgcttcagctctccgtgagagaccaacattgagttctttatccttttc 21833689  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Complemental strand, 371347 - 371296
Alignment:
Q  174 attgcttctgctctccgtgagagaccaacattgacatctttatccttttcca 225  Q
    |||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  371347 attgcttctgctctccttcagagaccaacattgacctctttatccttttcca 371296  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 53761152 - 53761200
Alignment:
Q  174 attgcttctgctctccgtgagagaccaacattgacatctttatcctttt 222  Q
    |||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtctttctcctttt 53761200  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 6588612 - 6588657
Alignment:
Q  171 ggcattgcttctgctctccgtgagagaccaacattgacatctttat 216  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||    
T  6588612 ggcattgcttctgctctccgtgagagaccaaaattgacgtctttat 6588657  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 9411856 - 9411803
Alignment:
Q  168 gttggcattgcttctgctctccgtgagagaccaacattgacatctttatccttt 221  Q
    |||||||||| |||||||||| ||||||||||||| ||||  ||||| ||||||    
T  9411856 gttggcattgtttctgctctctgtgagagaccaaccttgaggtctttgtccttt 9411803  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 28532533 - 28532497
Alignment:
Q  171 ggcattgcttctgctctccgtgagagaccaacattga 207  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28532533 ggcattgcttctgctctccgtgagagaccgacattga 28532497  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 32268289 - 32268231
Alignment:
Q  167 tgttggcattgcttctgctctccgtgagagaccaacattgacatctttatccttttcca 225  Q
    |||||| ||||||  ||| ||||||||||||||||||||||  ||| ||||||||||||    
T  32268289 tgttggtattgctaatgccctccgtgagagaccaacattgaggtctgtatccttttcca 32268231  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 41900804 - 41900854
Alignment:
Q  175 ttgcttctgctctccgtgagagaccaacattgacatctttatccttttcca 225  Q
    ||||||||||||||||  |||||||||||||||  |||||||| |||||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcattttcca 41900854  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 41886922 - 41886979
Alignment:
Q  168 gttggcattgcttctgctctccgtgagagaccaacattgacatctttatccttttcca 225  Q
    ||||| |||| |||||||||||| || |||||||||||||  ||||||||| ||||||    
T  41886922 gttggtattgtttctgctctccgggaaagaccaacattgaagtctttatccatttcca 41886979  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 19467779 - 19467827
Alignment:
Q  174 attgcttctgctctccgtgagagaccaacattgacatctttatcctttt 222  Q
    |||||||||||| |||||||||||||||||||||  |||||||| ||||    
T  19467779 attgcttctgctatccgtgagagaccaacattgaggtctttatcgtttt 19467827  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 18314970 - 18315021
Alignment:
Q  174 attgcttctgctctccgtgagagaccaacattgacatctttatccttttcca 225  Q
    ||||||| ||||||||||||||||||||| ||||  ||||||||| ||||||    
T  18314970 attgcttttgctctccgtgagagaccaactttgaggtctttatccatttcca 18315021  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 18314886 - 18314930
Alignment:
Q  90 caattgcttttccacttgttcaagaactgtatgtttctcaaagag 134  Q
    |||| |||||||||||||||||||||||||| | ||||| |||||    
T  18314886 caatcgcttttccacttgttcaagaactgtaagcttctcgaagag 18314930  T

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